family · mtDNA statistics

Aotidae

4 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

38.7%

mean GC, whole genome

SD 0.2, range 38.6–39.0%

16,590

median genome length, bp

Range 16,580–16,594 bp

genus

Regions

GC content of each region across Aotidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	38.74%	0.16	0.004	38.55%Aotus azarai	38.73%	38.95%Aotus lemurinus	–	–
Protein-coding	4	38.52%	0.19	0.005	38.34%Aotus azarai	38.48%	38.79%Aotus lemurinus	–	–
All rRNA	4	40.10%	0.36	0.009	39.82%Aotus trivirgatus	39.99%	40.60%Aotus lemurinus	–	–
All tRNA	4	35.79%	0.33	0.009	35.31%Aotus azarai	35.91%	36.04%Aotus trivirgatus	–	–
12S rRNA	4	41.36%	0.33	0.008	41.07%Aotus azarai	41.27%	41.84%Aotus lemurinus	–	–
16S rRNA	4	39.32%	0.44	0.011	38.92%Aotus trivirgatus	39.27%	39.83%Aotus lemurinus	–	–
D-loop	4	41.70%	0.69	0.017	41.03%Aotus azarai	41.69%	42.38%Aotus vociferans	–	–
ND1	4	38.70%	0.71	0.018	38.15%Aotus trivirgatus	38.50%	39.64%Aotus azarai	–	–
ND2	4	34.53%	0.36	0.011	34.17%Aotus trivirgatus	34.55%	34.84%Aotus azarai	–	–
COX1	4	39.96%	0.30	0.008	39.69%Aotus azarai	39.88%	40.40%Aotus lemurinus	–	–
COX2	4	39.99%	0.86	0.022	38.81%Aotus azarai	40.23%	40.70%Aotus trivirgatus	–	–
ATP8	4	27.86%	1.07	0.039	26.37%Aotus azarai	28.11%	28.86%Aotus lemurinus	–	–
ATP6	4	36.56%	0.91	0.025	35.98%Aotus trivirgatus	36.20%	37.89%Aotus lemurinus	–	–
COX3	4	43.43%	0.07	0.002	43.37%Aotus lemurinus	43.43%	43.49%Aotus azarai	–	–
ND3	4	37.36%	1.42	0.038	35.26%Aotus azarai	37.86%	38.44%Aotus lemurinus	–	–
ND4L	4	35.10%	0.32	0.009	34.68%Aotus azarai	35.19%	35.35%Aotus trivirgatus	–	–
ND4	4	36.60%	0.34	0.009	36.36%Aotus trivirgatus	36.47%	37.09%Aotus azarai	–	–
ND5	4	39.02%	0.37	0.009	38.54%Aotus azarai	39.06%	39.42%Aotus lemurinus	–	–
ND6	4	38.48%	0.58	0.015	38.02%Aotus azarai	38.30%	39.33%Aotus lemurinus	–	–
CYTB	4	40.96%	0.56	0.014	40.44%Aotus azarai	40.96%	41.49%Aotus trivirgatus	–	–

Genera of Aotidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Aotidae

Aotus	4	38.74%	0.16	0.004	38.55%Aotus azarai	38.73%	38.95%Aotus lemurinus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Aotidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Aotidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.