family · mtDNA statistics

Atelidae

9 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

39.3%

mean GC, whole genome

SD 0.4, range 39.0–40.1%

16,560

median genome length, bp

Range 16,520–16,678 bp

genera

Regions

GC content of each region across Atelidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	9	39.32%	0.37	0.009	38.95%Ateles paniscus	39.14%	40.09%Alouatta palliata	−0.68	0.04
Protein-coding	9	39.40%	0.39	0.010	39.04%Ateles paniscus	39.19%	40.18%Alouatta palliata	−0.76	0.02
All rRNA	9	40.01%	0.41	0.010	39.55%Lagothrix lagotricha	39.80%	40.60%Alouatta caraya	−0.51	0.17
All tRNA	9	36.18%	0.20	0.006	35.83%Ateles geoffroyi	36.15%	36.44%Ateles belzebuth	0.09	0.82
12S rRNA	9	41.48%	0.25	0.006	41.05%Ateles belzebuth	41.47%	41.82%Alouatta seniculus	−0.46	0.22
16S rRNA	9	39.11%	0.60	0.015	38.37%Lagothrix lagotricha	38.78%	40.21%Alouatta caraya	−0.44	0.24
D-loop	8	40.84%	1.76	0.043	37.65%Alouatta seniculus	40.85%	43.66%Alouatta palliata	−0.09	0.83
ND1	9	39.16%	0.87	0.022	38.28%Ateles chamek	39.02%	40.80%Alouatta palliata	−0.87	0.002
ND2	9	36.88%	0.78	0.021	36.00%Ateles belzebuth	37.05%	37.92%Alouatta caraya	−0.61	0.08
COX1	9	40.81%	0.39	0.009	40.33%Alouatta caraya	40.72%	41.51%Lagothrix lagotricha	0.19	0.63
COX2	9	39.54%	0.85	0.021	38.23%Ateles paniscus	39.53%	40.99%Alouatta palliata	−0.77	0.02
ATP8	9	29.52%	2.01	0.068	26.87%Ateles geoffroyi	28.86%	33.33%Lagothrix lagotricha	−0.53	0.14
ATP6	9	38.33%	0.79	0.021	37.00%Lagothrix lagotricha	38.33%	39.65%Alouatta palliata	−0.51	0.16
COX3	9	43.45%	0.67	0.015	42.35%Alouatta caraya	43.37%	44.77%Alouatta palliata	−0.35	0.36
ND3	9	35.07%	1.84	0.052	33.24%Ateles belzebuth	34.10%	38.15%Alouatta palliata	−0.80	0.009
ND4L	9	36.33%	1.15	0.032	35.02%Ateles belzebuth	36.70%	38.05%Lagothrix lagotricha	−0.53	0.15
ND4	9	38.50%	0.65	0.017	37.17%Alouatta seniculus	38.78%	39.36%Ateles paniscus	0.74	0.02
ND5	9	39.41%	0.53	0.013	38.70%Alouatta seniculus	39.42%	40.42%Alouatta palliata	−0.32	0.4
ND6	9	38.49%	0.85	0.022	37.27%Alouatta caraya	38.76%	39.89%Lagothrix lagotricha	0.30	0.43
CYTB	9	42.67%	1.09	0.025	40.61%Ateles geoffroyi	42.63%	44.21%Alouatta palliata	−0.75	0.02

Genera of Atelidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Atelidae

Ateles	5	39.09%	0.09	0.002	38.95%Ateles paniscus	39.10%	39.18%Ateles marginatus	−0.07	0.91
Alouatta	3	39.62%	0.48	0.012	39.12%Alouatta seniculus	39.64%	40.09%Alouatta palliata	–	–
Lagothrix	1	39.55%	–	–	39.55%Lagothrix lagotricha	39.55%	39.55%Lagothrix lagotricha	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Atelidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Atelidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.