family · mtDNA statistics

Eupleridae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

42.4%

mean GC, whole genome

SD 1.3, range 41.0–43.6%

16,766

median genome length, bp

Range 16,636–16,862 bp

genera

Regions

GC content of each region across Eupleridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	42.37%	1.32	0.031	40.96%Fossa fossana	42.59%	43.56%Cryptoprocta ferox	–	–
Protein-coding	3	43.10%	1.28	0.030	41.74%Fossa fossana	43.26%	44.30%Cryptoprocta ferox	–	–
All rRNA	3	41.59%	1.16	0.028	40.28%Fossa fossana	41.99%	42.51%Cryptoprocta ferox	–	–
All tRNA	3	37.85%	0.62	0.016	37.19%Fossa fossana	37.91%	38.44%Cryptoprocta ferox	–	–
12S rRNA	3	43.61%	1.84	0.042	41.58%Fossa fossana	44.09%	45.17%Galidia elegans	–	–
16S rRNA	3	40.36%	1.06	0.026	39.49%Fossa fossana	40.04%	41.54%Cryptoprocta ferox	–	–
D-loop	3	42.29%	2.78	0.066	39.25%Fossa fossana	42.92%	44.71%Cryptoprocta ferox	–	–
ND1	3	44.79%	1.00	0.022	43.72%Fossa fossana	44.92%	45.71%Galidia elegans	–	–
ND2	3	41.01%	1.05	0.026	40.40%Galidia elegans	40.40%	42.23%Cryptoprocta ferox	–	–
COX1	3	44.81%	1.83	0.041	42.72%Fossa fossana	45.63%	46.08%Cryptoprocta ferox	–	–
COX2	3	42.35%	1.71	0.040	41.08%Fossa fossana	41.67%	44.30%Cryptoprocta ferox	–	–
ATP8	3	36.44%	1.23	0.034	35.29%Galidia elegans	36.27%	37.75%Cryptoprocta ferox	–	–
ATP6	3	43.12%	1.71	0.040	41.26%Fossa fossana	43.47%	44.64%Cryptoprocta ferox	–	–
COX3	3	45.24%	1.10	0.024	44.26%Fossa fossana	45.03%	46.43%Cryptoprocta ferox	–	–
ND3	3	42.87%	0.60	0.014	42.20%Galidia elegans	43.06%	43.35%Fossa fossana	–	–
ND4L	3	40.97%	1.73	0.042	39.06%Fossa fossana	41.41%	42.42%Galidia elegans	–	–
ND4	3	41.87%	1.57	0.038	40.06%Fossa fossana	42.74%	42.82%Cryptoprocta ferox	–	–
ND5	3	42.16%	2.15	0.051	39.70%Fossa fossana	43.05%	43.71%Cryptoprocta ferox	–	–
ND6	3	40.15%	0.83	0.021	39.58%Fossa fossana	39.77%	41.10%Cryptoprocta ferox	–	–
CYTB	3	45.96%	1.58	0.034	44.39%Galidia elegans	45.96%	47.54%Cryptoprocta ferox	–	–

Genera of Eupleridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Eupleridae

Galidia	1	42.59%	–	–	42.59%Galidia elegans	42.59%	42.59%Galidia elegans	–	–
Cryptoprocta	1	43.56%	–	–	43.56%Cryptoprocta ferox	43.56%	43.56%Cryptoprocta ferox	–	–
Fossa	1	40.96%	–	–	40.96%Fossa fossana	40.96%	40.96%Fossa fossana	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Eupleridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Eupleridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.