family · mtDNA statistics

Galagidae

3 species in 2 genera. Every region of their mitochondrial genomes, side by side.

Group

species

41.7%

mean GC, whole genome

SD 1.2, range 41.0–43.1%

16,795

median genome length, bp

Range 16,650–16,827 bp

genera

Regions

GC content of each region across Galagidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	41.71%	1.24	0.030	40.96%Galago moholi	41.03%	43.14%Otolemur crassicaudatus	–	–
Protein-coding	3	42.12%	1.59	0.038	41.19%Galago senegalensis	41.22%	43.95%Otolemur crassicaudatus	–	–
All rRNA	3	40.93%	0.52	0.013	40.42%Galago moholi	40.91%	41.46%Otolemur crassicaudatus	–	–
All tRNA	3	39.86%	1.19	0.030	39.15%Galago moholi	39.19%	41.23%Otolemur crassicaudatus	–	–
12S rRNA	3	41.91%	0.22	0.005	41.66%Galago moholi	42.03%	42.04%Galago senegalensis	–	–
16S rRNA	3	40.32%	0.73	0.018	39.66%Galago moholi	40.20%	41.11%Otolemur crassicaudatus	–	–
D-loop	2	42.69%	1.37	0.032	41.72%Galago senegalensis	42.69%	43.66%Otolemur crassicaudatus	–	–
ND1	3	42.56%	1.35	0.032	41.57%Galago moholi	42.01%	44.10%Otolemur crassicaudatus	–	–
ND2	3	40.02%	1.45	0.036	39.17%Galago moholi	39.19%	41.69%Otolemur crassicaudatus	–	–
COX1	3	43.08%	2.46	0.057	41.44%Galago senegalensis	41.89%	45.91%Otolemur crassicaudatus	–	–
COX2	3	42.45%	0.51	0.012	41.96%Galago moholi	42.40%	42.98%Otolemur crassicaudatus	–	–
ATP8	3	36.44%	4.11	0.113	33.82%Galago moholi	34.31%	41.18%Otolemur crassicaudatus	–	–
ATP6	3	41.41%	2.03	0.049	40.23%Galago moholi	40.23%	43.76%Otolemur crassicaudatus	–	–
COX3	3	44.56%	2.30	0.052	42.98%Galago moholi	43.49%	47.19%Otolemur crassicaudatus	–	–
ND3	3	41.19%	0.93	0.023	40.35%Galago moholi	41.04%	42.20%Otolemur crassicaudatus	–	–
ND4L	3	39.84%	1.97	0.050	38.38%Galago moholi	39.06%	42.09%Otolemur crassicaudatus	–	–
ND4	3	41.03%	1.99	0.049	39.84%Galago senegalensis	39.91%	43.32%Otolemur crassicaudatus	–	–
ND5	3	41.43%	1.39	0.034	40.50%Galago senegalensis	40.77%	43.03%Otolemur crassicaudatus	–	–
ND6	3	42.61%	1.14	0.027	41.48%Galago senegalensis	42.61%	43.75%Otolemur crassicaudatus	–	–
CYTB	3	44.56%	0.53	0.012	44.21%Galago senegalensis	44.30%	45.18%Otolemur crassicaudatus	–	–

Genera of Galagidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Galagidae

Galago	2	40.99%	0.05	0.001	40.96%Galago moholi	40.99%	41.03%Galago senegalensis	–	–
Otolemur	1	43.14%	–	–	43.14%Otolemur crassicaudatus	43.14%	43.14%Otolemur crassicaudatus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Galagidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Galagidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.