family · mtDNA statistics

Indriidae

3 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

40.1%

mean GC, whole genome

SD 0.2, range 40.0–40.3%

17,099

median genome length, bp

Range 17,084–17,106 bp

genus

Regions

GC content of each region across Indriidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	40.14%	0.18	0.004	40.03%Propithecus verreauxi	40.05%	40.35%Propithecus diadema	–	–
Protein-coding	3	40.14%	0.22	0.005	40.01%Propithecus verreauxi	40.02%	40.39%Propithecus diadema	–	–
All rRNA	3	40.55%	0.60	0.015	40.10%Propithecus verreauxi	40.32%	41.23%Propithecus diadema	–	–
All tRNA	3	37.48%	0.25	0.007	37.22%Propithecus diadema	37.48%	37.72%Propithecus verreauxi	–	–
12S rRNA	3	41.97%	0.62	0.015	41.56%Propithecus verreauxi	41.67%	42.68%Propithecus diadema	–	–
16S rRNA	3	39.67%	0.61	0.015	39.19%Propithecus verreauxi	39.48%	40.36%Propithecus diadema	–	–
D-loop	2	41.59%	0.32	0.008	41.36%Propithecus verreauxi	41.59%	41.81%Propithecus tattersalli	–	–
ND1	3	41.12%	0.64	0.016	40.42%Propithecus tattersalli	41.26%	41.68%Propithecus verreauxi	–	–
ND2	3	37.46%	0.34	0.009	37.14%Propithecus verreauxi	37.43%	37.81%Propithecus diadema	–	–
COX1	3	40.76%	0.73	0.018	40.13%Propithecus tattersalli	40.58%	41.55%Propithecus diadema	–	–
COX2	3	41.42%	0.37	0.009	41.08%Propithecus verreauxi	41.37%	41.81%Propithecus tattersalli	–	–
ATP8	3	31.88%	0.48	0.015	31.40%Propithecus verreauxi	31.88%	32.37%Propithecus diadema	–	–
ATP6	3	39.65%	0.39	0.010	39.35%Propithecus diadema	39.50%	40.09%Propithecus verreauxi	–	–
COX3	3	44.56%	0.27	0.006	44.26%Propithecus verreauxi	44.64%	44.77%Propithecus tattersalli	–	–
ND3	3	41.19%	0.44	0.011	40.80%Propithecus diadema	41.09%	41.67%Propithecus verreauxi	–	–
ND4L	3	39.39%	1.21	0.031	38.38%Propithecus verreauxi	39.06%	40.74%Propithecus diadema	–	–
ND4	3	38.12%	0.74	0.020	37.30%Propithecus verreauxi	38.32%	38.75%Propithecus diadema	–	–
ND5	3	38.73%	0.32	0.008	38.36%Propithecus verreauxi	38.86%	38.97%Propithecus diadema	–	–
ND6	3	39.11%	0.77	0.020	38.34%Propithecus tattersalli	39.11%	39.88%Propithecus verreauxi	–	–
CYTB	3	43.63%	0.40	0.009	43.25%Propithecus diadema	43.60%	44.04%Propithecus verreauxi	–	–

Genera of Indriidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Indriidae

Propithecus	3	40.14%	0.18	0.004	40.03%Propithecus verreauxi	40.05%	40.35%Propithecus diadema	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Indriidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Indriidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.