family · mtDNA statistics

Lorisidae

4 species in 4 genera. Every region of their mitochondrial genomes, side by side.

Group

species

40.4%

mean GC, whole genome

SD 1.1, range 39.2–41.7%

16,770

median genome length, bp

Range 16,638–16,856 bp

genera

Regions

GC content of each region across Lorisidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	40.41%	1.07	0.027	39.21%Loris tardigradus	40.36%	41.72%Perodicticus potto	–	–
Protein-coding	4	40.80%	1.22	0.030	39.30%Loris tardigradus	40.85%	42.20%Perodicticus potto	–	–
All rRNA	4	40.59%	1.18	0.029	39.35%Loris tardigradus	40.46%	42.10%Perodicticus potto	–	–
All tRNA	4	36.77%	0.77	0.021	36.14%Loris tardigradus	36.52%	37.89%Nycticebus coucang	–	–
12S rRNA	4	42.44%	1.65	0.039	40.25%Loris tardigradus	42.71%	44.11%Perodicticus potto	–	–
16S rRNA	4	39.46%	1.00	0.025	38.68%Xanthonycticebus pygmaeus	39.14%	40.87%Perodicticus potto	–	–
D-loop	4	40.69%	1.73	0.043	38.99%Xanthonycticebus pygmaeus	40.52%	42.72%Perodicticus potto	–	–
ND1	4	40.70%	1.45	0.036	39.60%Loris tardigradus	40.18%	42.84%Perodicticus potto	–	–
ND2	4	38.07%	2.33	0.061	36.11%Loris tardigradus	37.49%	41.19%Perodicticus potto	–	–
COX1	4	42.07%	0.92	0.022	40.79%Loris tardigradus	42.28%	42.93%Nycticebus coucang	–	–
COX2	4	41.67%	2.02	0.048	39.91%Loris tardigradus	41.16%	44.44%Perodicticus potto	–	–
ATP8	4	34.68%	1.41	0.041	33.82%Nycticebus coucang	34.07%	36.76%Perodicticus potto	–	–
ATP6	4	40.16%	0.88	0.022	38.91%Loris tardigradus	40.38%	40.97%Nycticebus coucang	–	–
COX3	4	42.35%	1.23	0.029	40.69%Loris tardigradus	42.54%	43.62%Perodicticus potto	–	–
ND3	4	39.28%	1.05	0.027	38.44%Nycticebus coucang	38.96%	40.75%Perodicticus potto	–	–
ND4L	4	41.41%	1.80	0.044	39.06%Loris tardigradus	41.58%	43.43%Nycticebus coucang	–	–
ND4	4	41.07%	0.50	0.012	40.35%Loris tardigradus	41.20%	41.51%Perodicticus potto	–	–
ND5	4	40.03%	1.65	0.041	38.13%Loris tardigradus	40.07%	41.86%Perodicticus potto	–	–
ND6	4	42.19%	0.32	0.008	41.86%Loris tardigradus	42.14%	42.61%Nycticebus coucang	–	–
CYTB	4	41.86%	1.93	0.046	39.30%Loris tardigradus	42.28%	43.60%Perodicticus potto	–	–

Genera of Lorisidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Lorisidae

Loris	1	39.21%	–	–	39.21%Loris tardigradus	39.21%	39.21%Loris tardigradus	–	–
Nycticebus	1	40.75%	–	–	40.75%Nycticebus coucang	40.75%	40.75%Nycticebus coucang	–	–
Perodicticus	1	41.72%	–	–	41.72%Perodicticus potto	41.72%	41.72%Perodicticus potto	–	–
Xanthonycticebus	1	39.96%	–	–	39.96%Xanthonycticebus pygmaeus	39.96%	39.96%Xanthonycticebus pygmaeus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Lorisidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Lorisidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.