family · mtDNA statistics

Pitheciidae

5 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

39.2%

mean GC, whole genome

SD 0.6, range 38.5–40.1%

16,563

median genome length, bp

Range 16,551–16,706 bp

genera

Regions

GC content of each region across Pitheciidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	5	39.18%	0.63	0.016	38.46%Chiropotes albinasus	39.25%	40.10%Plecturocebus donacophilus	0.02	0.98
Protein-coding	5	39.09%	0.46	0.012	38.77%Chiropotes albinasus	38.95%	39.90%Plecturocebus donacophilus	−0.12	0.84
All rRNA	5	40.80%	0.70	0.017	39.71%Chiropotes albinasus	40.77%	41.45%Plecturocebus moloch	0.42	0.49
All tRNA	5	36.22%	0.54	0.015	35.54%Cacajao calvus	36.18%	36.98%Plecturocebus donacophilus	−0.40	0.5
12S rRNA	5	42.60%	0.73	0.017	41.82%Chiropotes albinasus	42.90%	43.43%Plecturocebus moloch	−0.06	0.92
16S rRNA	5	39.70%	0.81	0.020	38.41%Chiropotes albinasus	40.03%	40.39%Plecturocebus donacophilus	0.62	0.26
D-loop	3	41.82%	0.78	0.019	40.95%Plecturocebus moloch	42.01%	42.48%Plecturocebus donacophilus	–	–
ND1	5	39.93%	1.04	0.026	38.39%Chiropotes albinasus	40.46%	40.78%Plecturocebus donacophilus	0.70	0.19
ND2	5	35.75%	1.22	0.034	34.46%Cacajao calvus	36.09%	37.44%Plecturocebus donacophilus	−0.18	0.77
COX1	5	40.91%	0.69	0.017	40.21%Chiropotes albinasus	40.91%	42.01%Plecturocebus donacophilus	−0.00	1
COX2	5	39.89%	0.35	0.009	39.68%Cacajao calvus	39.76%	40.50%Plecturocebus donacophilus	−0.27	0.66
ATP8	5	30.34%	2.52	0.083	26.57%Cacajao calvus	30.92%	33.33%Plecturocebus moloch	−0.47	0.42
ATP6	5	37.18%	1.69	0.046	35.68%Plecturocebus cupreus	36.86%	39.94%Chiropotes albinasus	−0.47	0.43
COX3	5	43.29%	0.87	0.020	42.22%Cacajao calvus	43.49%	44.52%Plecturocebus donacophilus	−0.62	0.26
ND3	5	36.77%	1.32	0.036	35.55%Plecturocebus cupreus	36.71%	38.73%Cacajao calvus	0.47	0.42
ND4L	5	34.07%	0.93	0.027	32.66%Cacajao calvus	34.34%	35.02%Plecturocebus donacophilus	−0.71	0.18
ND4	5	38.53%	1.38	0.036	36.95%Chiropotes albinasus	38.25%	40.29%Plecturocebus donacophilus	0.05	0.93
ND5	5	39.10%	0.54	0.014	38.32%Plecturocebus cupreus	39.31%	39.58%Cacajao calvus	0.15	0.81
ND6	5	37.72%	0.80	0.021	36.65%Cacajao calvus	37.94%	38.67%Plecturocebus moloch	−0.63	0.26
CYTB	5	41.27%	0.53	0.013	40.44%Plecturocebus moloch	41.51%	41.75%Plecturocebus cupreus	0.27	0.66

Genera of Pitheciidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Pitheciidae

Plecturocebus	3	39.57%	0.46	0.012	39.25%Plecturocebus cupreus	39.35%	40.10%Plecturocebus donacophilus	–	–
Cacajao	1	38.73%	–	–	38.73%Cacajao calvus	38.73%	38.73%Cacajao calvus	–	–
Chiropotes	1	38.46%	–	–	38.46%Chiropotes albinasus	38.46%	38.46%Chiropotes albinasus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Pitheciidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Pitheciidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.