family · mtDNA statistics

Vespertilionidae

17 species in 7 genera. Every region of their mitochondrial genomes, side by side.

Group

species

36.8%

mean GC, whole genome

SD 1.3, range 34.0–38.8%

17,038

median genome length, bp

Range 16,175–17,478 bp

genera

Regions

GC content of each region across Vespertilionidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	17	36.84%	1.28	0.035	33.99%Lasionycteris noctivagans	36.86%	38.82%Cnephaeus nilssonii	0.31	0.22
Protein-coding	17	36.99%	1.40	0.038	33.81%Lasionycteris noctivagans	37.06%	39.18%Myotis brandtii	0.36	0.16
All rRNA	17	37.26%	1.17	0.031	35.96%Lasionycteris noctivagans	36.84%	39.68%Cnephaeus nilssonii	−0.01	0.98
All tRNA	17	35.16%	0.81	0.023	33.71%Lasionycteris noctivagans	35.23%	36.90%Cnephaeus nilssonii	0.34	0.18
12S rRNA	17	39.33%	1.22	0.031	37.71%Myotis lucifugus	39.07%	42.19%Cnephaeus nilssonii	−0.24	0.35
16S rRNA	17	35.99%	1.28	0.036	34.74%Lasionycteris noctivagans	35.42%	38.73%Nyctalus noctula	0.13	0.61
D-loop	10	36.36%	3.14	0.086	30.84%Lasionycteris noctivagans	36.32%	41.33%Plecotus auritus	0.15	0.67
ND1	17	37.71%	1.71	0.045	33.16%Lasionycteris noctivagans	37.91%	40.83%Myotis brandtii	0.44	0.07
ND2	17	33.83%	1.70	0.050	30.42%Lasionycteris noctivagans	33.69%	37.72%Myotis brandtii	0.58	0.01
COX1	17	39.84%	1.23	0.031	38.06%Myotis bechsteinii	39.87%	42.27%Plecotus auritus	0.33	0.19
COX2	17	37.04%	1.63	0.044	33.77%Lasionycteris noctivagans	37.13%	40.50%Nyctalus noctula	0.15	0.57
ATP8	17	31.03%	2.38	0.077	28.43%Myotis leibii	30.88%	36.27%Nyctalus noctula	−0.17	0.5
ATP6	17	36.61%	1.38	0.038	33.92%Myotis myotis	36.71%	39.21%Vespertilio murinus	0.03	0.9
COX3	17	39.24%	1.91	0.049	35.97%Lasionycteris noctivagans	38.90%	43.88%Nyctalus noctula	0.12	0.65
ND3	17	34.67%	2.15	0.062	29.77%Pipistrellus pipistrellus	34.87%	39.37%Nyctalus noctula	0.21	0.41
ND4L	17	35.97%	2.33	0.065	29.29%Pipistrellus pipistrellus	36.36%	38.72%Myotis evotis	0.36	0.16
ND4	17	36.11%	1.93	0.053	32.00%Lasionycteris noctivagans	35.49%	40.06%Myotis brandtii	0.44	0.07
ND5	17	35.96%	1.70	0.047	32.34%Lasionycteris noctivagans	36.37%	38.46%Nyctalus noctula	0.34	0.18
ND6	17	35.77%	1.51	0.042	32.39%Lasionycteris noctivagans	35.80%	38.45%Cnephaeus nilssonii	0.17	0.51
CYTB	17	39.06%	1.72	0.044	35.35%Lasionycteris noctivagans	38.86%	42.11%Nyctalus noctula	0.12	0.64

Genera of Vespertilionidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Vespertilionidae

Myotis	10	36.63%	0.81	0.022	35.33%Myotis myotis	36.58%	38.27%Myotis brandtii	0.41	0.24
Cnephaeus	2	38.06%	1.06	0.028	37.31%Cnephaeus serotinus	38.06%	38.82%Cnephaeus nilssonii	–	–
Nyctalus	1	38.68%	–	–	38.68%Nyctalus noctula	38.68%	38.68%Nyctalus noctula	–	–
Plecotus	1	38.50%	–	–	38.50%Plecotus auritus	38.50%	38.50%Plecotus auritus	–	–
Lasionycteris	1	33.99%	–	–	33.99%Lasionycteris noctivagans	33.99%	33.99%Lasionycteris noctivagans	–	–
Pipistrellus	1	35.67%	–	–	35.67%Pipistrellus pipistrellus	35.67%	35.67%Pipistrellus pipistrellus	–	–
Vespertilio	1	36.98%	–	–	36.98%Vespertilio murinus	36.98%	36.98%Vespertilio murinus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Vespertilionidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Vespertilionidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.