order · mtDNA statistics

Uranoscopiformes

3 species in 1 family. Every region of their mitochondrial genomes, side by side.

Group

species

47.6%

mean GC, whole genome

SD 0.2, range 47.4–47.8%

16,519

median genome length, bp

Range 16,519–16,537 bp

family

Regions

GC content of each region across Uranoscopiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	47.63%	0.19	0.004	47.43%Ammodytes personatus	47.66%	47.80%Ammodytes dubius	–	–
Protein-coding	3	48.54%	0.25	0.005	48.27%Ammodytes personatus	48.57%	48.76%Ammodytes dubius	–	–
All rRNA	3	47.51%	0.04	0.001	47.48%Ammodytes americanus	47.48%	47.56%Ammodytes personatus	–	–
All tRNA	3	45.24%	0.13	0.003	45.11%Ammodytes personatus	45.24%	45.37%Ammodytes dubius	–	–
12S rRNA	3	49.52%	0.11	0.002	49.42%Ammodytes personatus	49.52%	49.63%Ammodytes americanus	–	–
16S rRNA	3	46.39%	0.13	0.003	46.29%Ammodytes americanus	46.34%	46.53%Ammodytes personatus	–	–
D-loop	3	39.88%	0.15	0.004	39.77%Ammodytes personatus	39.81%	40.05%Ammodytes americanus	–	–
ND1	3	49.23%	0.41	0.008	48.82%Ammodytes personatus	49.23%	49.64%Ammodytes dubius	–	–
ND2	3	50.80%	0.65	0.013	50.29%Ammodytes personatus	50.57%	51.53%Ammodytes dubius	–	–
COX1	3	46.99%	0.39	0.008	46.54%Ammodytes personatus	47.18%	47.24%Ammodytes americanus	–	–
COX2	3	45.07%	0.38	0.009	44.78%Ammodytes americanus	44.93%	45.51%Ammodytes personatus	–	–
ATP8	3	41.67%	0.60	0.014	41.07%Ammodytes personatus	41.67%	42.26%Ammodytes americanus	–	–
ATP6	3	47.29%	0.88	0.019	46.78%Ammodytes americanus	46.78%	48.32%Ammodytes personatus	–	–
COX3	3	50.74%	0.37	0.007	50.32%Ammodytes personatus	50.96%	50.96%Ammodytes americanus	–	–
ND3	3	50.05%	0.44	0.009	49.57%Ammodytes personatus	50.14%	50.43%Ammodytes americanus	–	–
ND4L	3	51.07%	0.51	0.010	50.51%Ammodytes personatus	51.18%	51.52%Ammodytes dubius	–	–
ND4	3	48.41%	0.29	0.006	48.19%Ammodytes dubius	48.30%	48.73%Ammodytes personatus	–	–
ND5	3	47.55%	0.64	0.013	46.82%Ammodytes personatus	47.88%	47.96%Ammodytes dubius	–	–
ND6	3	51.34%	0.69	0.013	50.57%Ammodytes americanus	51.53%	51.92%Ammodytes dubius	–	–
CYTB	3	49.22%	0.58	0.012	48.55%Ammodytes personatus	49.50%	49.61%Ammodytes dubius	–	–

Families of Uranoscopiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Uranoscopiformes

Ammodytidae	3	47.63%	0.19	0.004	47.43%Ammodytes personatus	47.66%	47.80%Ammodytes dubius	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Uranoscopiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Uranoscopiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.