family · mtDNA statistics

Cacatuidae

6 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

45.9%

mean GC, whole genome

SD 0.9, range 44.6–47.0%

18,941

median genome length, bp

Range 16,841–19,084 bp

genera

Regions

GC content of each region across Cacatuidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	45.92%	0.90	0.020	44.59%Zanda latirostris	46.14%	46.98%Cacatua galerita	0.10	0.85
Protein-coding	6	46.34%	0.98	0.021	44.79%Zanda latirostris	46.74%	47.30%Cacatua galerita	−0.01	0.98
All rRNA	6	48.27%	0.49	0.010	47.70%Eolophus roseicapilla	48.14%	49.06%Cacatua galerita	0.47	0.35
All tRNA	6	42.10%	0.74	0.018	41.03%Eolophus roseicapilla	42.11%	43.12%Cacatua galerita	0.19	0.72
12S rRNA	6	49.19%	0.72	0.015	48.35%Eolophus roseicapilla	49.07%	50.26%Cacatua galerita	0.56	0.25
16S rRNA	6	47.71%	0.45	0.009	47.29%Zanda latirostris	47.57%	48.32%Cacatua galerita	0.28	0.59
D-loop	6	43.40%	2.01	0.046	39.68%Zanda latirostris	44.17%	45.14%Cacatua galerita	0.01	0.98
ND1	6	47.23%	0.87	0.018	45.87%Zanda latirostris	47.71%	47.91%Cacatua pastinator	−0.26	0.62
ND2	6	45.10%	1.21	0.027	42.79%Eolophus roseicapilla	45.34%	46.15%Cacatua alba	−0.16	0.76
COX1	6	46.89%	0.72	0.015	45.99%Eolophus roseicapilla	46.93%	47.74%Cacatua alba	−0.03	0.96
COX2	6	44.05%	0.54	0.012	43.13%Zanda latirostris	44.15%	44.74%Eolophus roseicapilla	0.26	0.62
ATP8	6	41.90%	1.33	0.032	39.88%Eolophus roseicapilla	41.96%	43.64%Cacatua galerita	0.13	0.81
ATP6	6	46.51%	1.42	0.030	44.15%Zanda latirostris	47.22%	47.66%Cacatua alba	−0.19	0.72
COX3	6	47.73%	0.88	0.018	46.56%Eolophus roseicapilla	47.83%	48.98%Cacatua galerita	0.20	0.7
ND3	6	43.71%	0.94	0.021	42.57%Cacatua pastinator	43.71%	45.14%Cacatua galerita	0.77	0.07
ND4L	6	46.80%	1.78	0.038	43.43%Zanda latirostris	47.31%	48.48%Cacatua galerita	0.30	0.56
ND4	6	46.49%	1.25	0.027	44.86%Zanda latirostris	46.91%	47.81%Cacatua galerita	−0.00	1
ND5	6	45.23%	1.21	0.027	43.08%Zanda latirostris	45.37%	46.50%Cacatua galerita	0.26	0.61
ND6	6	49.94%	2.32	0.046	46.05%Zanda latirostris	51.06%	51.64%Cacatua goffiniana	−0.17	0.75
CYTB	6	46.88%	1.31	0.028	44.64%Zanda latirostris	47.37%	48.07%Cacatua goffiniana	−0.12	0.82

Genera of Cacatuidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Cacatuidae

Cacatua	4	46.45%	0.40	0.009	46.12%Cacatua goffiniana	46.35%	46.98%Cacatua galerita	–	–
Eolophus	1	45.11%	–	–	45.11%Eolophus roseicapilla	45.11%	45.11%Eolophus roseicapilla	–	–
Zanda	1	44.59%	–	–	44.59%Zanda latirostris	44.59%	44.59%Zanda latirostris	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Cacatuidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Cacatuidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.