family · mtDNA statistics

Chlamyphoridae

6 species in 5 genera. Every region of their mitochondrial genomes, side by side.

Group

species

41.0%

mean GC, whole genome

SD 1.7, range 39.8–44.4%

16,600

median genome length, bp

Range 16,492–16,980 bp

genera

Regions

GC content of each region across Chlamyphoridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	40.98%	1.74	0.042	39.77%Chaetophractus villosus	40.26%	44.44%Priodontes maximus	−0.24	0.65
Protein-coding	6	41.42%	1.79	0.043	40.25%Chaetophractus villosus	40.62%	44.95%Priodontes maximus	−0.20	0.7
All rRNA	6	41.16%	1.78	0.043	39.80%Zaedyus pichiy	40.30%	44.02%Priodontes maximus	0.22	0.68
All tRNA	6	38.66%	1.27	0.033	37.30%Chaetophractus villosus	38.37%	40.99%Priodontes maximus	−0.28	0.59
12S rRNA	6	42.22%	2.05	0.049	40.47%Chaetophractus vellerosus	41.32%	45.15%Tolypeutes matacus	0.48	0.33
16S rRNA	6	40.52%	1.74	0.043	39.32%Zaedyus pichiy	39.68%	43.76%Priodontes maximus	0.01	0.98
D-loop	6	39.29%	3.06	0.078	35.45%Tolypeutes matacus	39.38%	44.59%Priodontes maximus	−0.74	0.09
ND1	6	42.94%	1.07	0.025	41.68%Chaetophractus vellerosus	42.70%	44.71%Priodontes maximus	−0.00	1
ND2	6	36.66%	2.19	0.060	34.74%Chaetophractus villosus	35.93%	40.88%Priodontes maximus	−0.24	0.65
COX1	6	43.71%	1.39	0.032	42.74%Chaetophractus vellerosus	43.26%	46.50%Priodontes maximus	−0.27	0.6
COX2	6	40.58%	1.37	0.034	38.74%Chaetophractus villosus	40.51%	42.98%Priodontes maximus	−0.34	0.51
ATP8	6	36.10%	1.17	0.032	34.31%Chaetophractus villosus	36.27%	37.68%Priodontes maximus	−0.15	0.77
ATP6	6	41.21%	3.55	0.086	37.74%Chaetophractus villosus	40.53%	48.02%Priodontes maximus	−0.31	0.55
COX3	6	45.03%	1.51	0.034	43.88%Zaedyus pichiy	44.45%	47.96%Priodontes maximus	−0.29	0.58
ND3	6	40.23%	2.55	0.063	37.57%Zaedyus pichiy	39.74%	44.80%Priodontes maximus	0.09	0.87
ND4L	6	38.50%	2.44	0.063	35.69%Chaetophractus villosus	37.88%	42.09%Priodontes maximus	0.11	0.83
ND4	6	40.23%	2.00	0.050	38.53%Euphractus sexcinctus	39.66%	44.12%Priodontes maximus	−0.20	0.7
ND5	6	41.06%	1.91	0.047	39.65%Euphractus sexcinctus	40.20%	44.57%Priodontes maximus	−0.05	0.93
ND6	6	41.46%	2.41	0.058	39.20%Chaetophractus villosus	40.63%	46.02%Priodontes maximus	−0.29	0.58
CYTB	6	43.18%	1.83	0.042	41.88%Euphractus sexcinctus	42.54%	46.75%Priodontes maximus	−0.23	0.65

Genera of Chlamyphoridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Chlamyphoridae

Chaetophractus	2	40.00%	0.33	0.008	39.77%Chaetophractus villosus	40.00%	40.23%Chaetophractus vellerosus	–	–
Euphractus	1	40.29%	–	–	40.29%Euphractus sexcinctus	40.29%	40.29%Euphractus sexcinctus	–	–
Zaedyus	1	40.17%	–	–	40.17%Zaedyus pichiy	40.17%	40.17%Zaedyus pichiy	–	–
Tolypeutes	1	40.97%	–	–	40.97%Tolypeutes matacus	40.97%	40.97%Tolypeutes matacus	–	–
Priodontes	1	44.44%	–	–	44.44%Priodontes maximus	44.44%	44.44%Priodontes maximus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Chlamyphoridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Chlamyphoridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.