order · mtDNA statistics

Cingulata

8 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

40.5%

mean GC, whole genome

SD 1.7, range 38.9–44.4%

16,643

median genome length, bp

Range 16,492–17,056 bp

families

Regions

GC content of each region across Cingulata, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	8	40.51%	1.72	0.042	38.86%Dasypus novemcinctus	40.20%	44.44%Priodontes maximus	−0.19	0.65
Protein-coding	8	40.97%	1.72	0.042	39.54%Dasypus novemcinctus	40.57%	44.95%Priodontes maximus	−0.16	0.71
All rRNA	8	40.85%	1.61	0.039	39.80%Zaedyus pichiy	40.10%	44.02%Priodontes maximus	0.22	0.61
All tRNA	8	38.48%	1.14	0.030	37.30%Chaetophractus villosus	38.34%	40.99%Priodontes maximus	−0.20	0.63
12S rRNA	8	41.73%	1.96	0.047	40.00%Dasypus septemcinctus	40.84%	45.15%Tolypeutes matacus	0.45	0.26
16S rRNA	8	40.31%	1.52	0.038	39.32%Zaedyus pichiy	39.68%	43.76%Priodontes maximus	0.02	0.97
D-loop	8	38.28%	3.38	0.088	33.17%Dasypus novemcinctus	38.31%	44.59%Priodontes maximus	−0.60	0.12
ND1	8	42.54%	1.18	0.028	41.07%Dasypus novemcinctus	42.41%	44.71%Priodontes maximus	−0.00	1
ND2	8	36.25%	2.00	0.055	34.74%Chaetophractus villosus	35.64%	40.88%Priodontes maximus	−0.22	0.6
COX1	8	43.26%	1.49	0.035	41.18%Dasypus septemcinctus	43.11%	46.50%Priodontes maximus	−0.13	0.76
COX2	8	40.21%	1.35	0.034	38.74%Chaetophractus villosus	40.28%	42.98%Priodontes maximus	−0.25	0.55
ATP8	8	35.53%	1.54	0.043	32.84%Dasypus novemcinctus	35.78%	37.68%Priodontes maximus	−0.14	0.73
ATP6	8	40.88%	3.06	0.075	37.74%Chaetophractus villosus	40.09%	48.02%Priodontes maximus	−0.29	0.49
COX3	8	44.44%	1.69	0.038	42.47%Dasypus septemcinctus	44.26%	47.96%Priodontes maximus	−0.18	0.68
ND3	8	40.07%	2.18	0.054	37.57%Zaedyus pichiy	39.60%	44.80%Priodontes maximus	0.07	0.86
ND4L	8	38.47%	2.07	0.054	35.69%Chaetophractus villosus	38.22%	42.09%Priodontes maximus	0.11	0.79
ND4	8	39.64%	2.01	0.051	37.88%Dasypus novemcinctus	39.33%	44.12%Priodontes maximus	−0.14	0.73
ND5	8	40.51%	1.93	0.048	38.32%Dasypus novemcinctus	39.87%	44.57%Priodontes maximus	−0.05	0.9
ND6	8	40.82%	2.35	0.058	38.64%Dasypus novemcinctus	40.34%	46.02%Priodontes maximus	−0.24	0.57
CYTB	8	42.94%	1.62	0.038	41.88%Euphractus sexcinctus	42.41%	46.75%Priodontes maximus	−0.23	0.58

Families of Cingulata

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Cingulata

Chlamyphoridae	6	40.98%	1.74	0.042	39.77%Chaetophractus villosus	40.26%	44.44%Priodontes maximus	−0.24	0.65
Dasypodidae	2	39.09%	0.32	0.008	38.86%Dasypus novemcinctus	39.09%	39.32%Dasypus septemcinctus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Cingulata

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Cingulata taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.