family · mtDNA statistics

Emmelichthyidae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

46.1%

mean GC, whole genome

SD 0.8, range 45.5–47.0%

16,505

median genome length, bp

Range 16,297–16,598 bp

genera

Regions

GC content of each region across Emmelichthyidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	46.13%	0.76	0.016	45.48%Plagiogeneion rubiginosum	45.94%	46.96%Erythrocles schlegelii	–	–
Protein-coding	3	46.59%	0.90	0.019	45.77%Plagiogeneion rubiginosum	46.44%	47.56%Erythrocles schlegelii	–	–
All rRNA	3	46.72%	0.27	0.006	46.42%Emmelichthys nitidus	46.77%	46.96%Erythrocles schlegelii	–	–
All tRNA	3	45.56%	0.24	0.005	45.30%Plagiogeneion rubiginosum	45.59%	45.78%Emmelichthys nitidus	–	–
12S rRNA	3	48.15%	0.37	0.008	47.89%Plagiogeneion rubiginosum	47.99%	48.58%Erythrocles schlegelii	–	–
16S rRNA	3	45.91%	0.32	0.007	45.55%Emmelichthys nitidus	46.05%	46.14%Plagiogeneion rubiginosum	–	–
D-loop	3	38.54%	0.75	0.019	37.84%Emmelichthys nitidus	38.44%	39.33%Erythrocles schlegelii	–	–
ND1	3	46.32%	1.82	0.039	45.03%Plagiogeneion rubiginosum	45.54%	48.41%Erythrocles schlegelii	–	–
ND2	3	49.52%	0.96	0.019	48.57%Plagiogeneion rubiginosum	49.52%	50.48%Erythrocles schlegelii	–	–
COX1	3	45.50%	0.52	0.011	44.94%Plagiogeneion rubiginosum	45.58%	45.97%Erythrocles schlegelii	–	–
COX2	3	45.20%	0.65	0.014	44.57%Plagiogeneion rubiginosum	45.15%	45.88%Emmelichthys nitidus	–	–
ATP8	3	46.23%	0.69	0.015	45.83%Erythrocles schlegelii	45.83%	47.02%Emmelichthys nitidus	–	–
ATP6	3	46.59%	1.03	0.022	45.61%Emmelichthys nitidus	46.49%	47.66%Erythrocles schlegelii	–	–
COX3	3	47.18%	1.10	0.023	45.99%Emmelichthys nitidus	47.39%	48.15%Erythrocles schlegelii	–	–
ND3	3	49.57%	0.76	0.015	49.00%Plagiogeneion rubiginosum	49.28%	50.43%Erythrocles schlegelii	–	–
ND4L	3	47.47%	2.76	0.058	45.12%Emmelichthys nitidus	46.80%	50.51%Erythrocles schlegelii	–	–
ND4	3	46.51%	0.91	0.019	45.62%Plagiogeneion rubiginosum	46.49%	47.43%Erythrocles schlegelii	–	–
ND5	3	45.62%	1.12	0.024	44.54%Plagiogeneion rubiginosum	45.57%	46.76%Erythrocles schlegelii	–	–
ND6	3	44.96%	2.03	0.045	43.10%Plagiogeneion rubiginosum	44.64%	47.13%Erythrocles schlegelii	–	–
CYTB	3	46.92%	1.03	0.022	45.80%Plagiogeneion rubiginosum	47.15%	47.81%Emmelichthys nitidus	–	–

Genera of Emmelichthyidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Emmelichthyidae

Emmelichthys	1	45.94%	–	–	45.94%Emmelichthys nitidus	45.94%	45.94%Emmelichthys nitidus	–	–
Erythrocles	1	46.96%	–	–	46.96%Erythrocles schlegelii	46.96%	46.96%Erythrocles schlegelii	–	–
Plagiogeneion	1	45.48%	–	–	45.48%Plagiogeneion rubiginosum	45.48%	45.48%Plagiogeneion rubiginosum	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Emmelichthyidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Emmelichthyidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.