Emmelichthys nitidus
Cape bonnetmouth
GC content
45.94%
Whole genome
Non-coding
901 bp
D-loop 835 bp
Where Cape bonnetmouth sits among 2,335 species
Whole-genome GC content against maximum lifespan. Cape bonnetmouth has the 1,607th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,505 bp
- GC skew (G − C) / (G + C)
- −0.266
- AT skew (A − T) / (A + T)
- +0.033
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,505 bp
Protein-coding11,408 bp
12S rRNA946 bp
16S rRNA1,697 bp
All tRNA1,553 bp
D-loop835 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.54% | −0.306 | −0.070 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.52% | −0.452 | +0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.58% | −0.182 | −0.118 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.88% | −0.268 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.519 | +0.169 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.61% | −0.397 | −0.097 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.285 | −0.033 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.314 | −0.299 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.343 | −0.104 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.49% | −0.340 | +0.009 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.57% | −0.379 | +0.027 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.373 | +0.419 | |||||
| CYTBCytochrome b | 1,142 bp | 47.81% | −0.359 | −0.044 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 47.99% | −0.079 | +0.187 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 45.55% | −0.100 | +0.203 | |||||
| D-loopControl region (D-loop) | 835 bp | 37.84% | −0.146 | +0.056 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU103
UUC130
Leu L17.4%
UUA93
UUG10
CUU160
CUC164
CUA181
CUG55
Ile I7.0%
AUU159
AUC108
Met M4.1%
AUA74
AUG81
Val V5.8%
GUU73
GUC54
GUA67
GUG25
Ser S6.5%
UCU45
UCC66
UCA68
UCG11
AGU13
AGC43
Pro P5.8%
CCU51
CCC108
CCA51
CCG11
Thr T7.9%
ACU52
ACC119
ACA120
ACG10
Ala A9.1%
GCU66
GCC155
GCA111
GCG15
Tyr Y2.9%
UAU40
UAC72
His H2.8%
CAU35
CAC71
Gln Q2.6%
CAA80
CAG19
Asn N3.1%
AAU45
AAC74
Lys K1.9%
AAA65
AAG9
Asp D1.9%
GAU15
GAC58
Glu E2.7%
GAA72
GAG30
Cys C0.6%
UGU8
UGC15
Trp W3.1%
UGA101
UGG18
Arg R2.0%
CGU9
CGC11
CGA44
CGG12
Gly G6.4%
GGU36
GGC81
GGA86
GGG42
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_088577.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,783 | 1,697 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 45.5% |
| tRNA-Ile | Transfer RNA | 3,838 | 3,907 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,091 | 1,046 bp | + | 49.5% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,163 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,232 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,345 | 5,411 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,482 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,484 | 7,034 | 1,551 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,036 | 7,106 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,110 | 7,180 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,189 | 7,879 | 691 bp | + | 45.9% |
| tRNA-Lys | Transfer RNA | 7,880 | 7,954 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,123 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 45.6% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,653 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,654 | 10,002 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 10,003 | 10,071 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,072 | 10,368 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,362 | 11,742 | 1,381 bp | + | 46.5% |
| tRNA-His | Transfer RNA | 11,743 | 11,811 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,812 | 11,879 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,957 | 13,795 | 1,839 bp | + | 45.6% |
| ND6 | Protein-coding gene | 13,792 | 14,313 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,314 | 14,382 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,528 | 1,142 bp | + | 47.8% |
| tRNA-Thr | Transfer RNA | 15,529 | 15,600 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,601 | 15,670 | 70 bp | − | – |
| D-loop | Control region | 15,671 | 16,505 | 835 bp | – | 37.8% |