family · mtDNA statistics

Esocidae

3 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

43.4%

mean GC, whole genome

SD 0.8, range 42.5–43.9%

16,729

median genome length, bp

Range 16,695–16,775 bp

genus

Regions

GC content of each region across Esocidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	43.45%	0.78	0.018	42.55%Esox niger	43.88%	43.91%Esox masquinongy	–	–
Protein-coding	3	44.08%	0.68	0.015	43.29%Esox niger	44.47%	44.47%Esox masquinongy	–	–
All rRNA	3	45.01%	1.11	0.025	43.74%Esox niger	45.53%	45.77%Esox lucius	–	–
All tRNA	3	44.32%	0.20	0.005	44.12%Esox masquinongy	44.32%	44.52%Esox lucius	–	–
12S rRNA	3	45.23%	0.97	0.022	44.11%Esox niger	45.65%	45.92%Esox masquinongy	–	–
16S rRNA	3	44.89%	1.21	0.027	43.53%Esox niger	45.31%	45.84%Esox lucius	–	–
D-loop	3	31.43%	2.03	0.065	29.39%Esox niger	31.44%	33.45%Esox masquinongy	–	–
ND1	3	45.35%	1.34	0.030	44.10%Esox masquinongy	45.16%	46.77%Esox lucius	–	–
ND2	3	44.38%	1.08	0.024	43.13%Esox niger	44.95%	45.05%Esox lucius	–	–
COX1	3	43.61%	0.93	0.021	43.00%Esox niger	43.13%	44.68%Esox masquinongy	–	–
COX2	3	42.88%	1.89	0.044	41.39%Esox lucius	42.26%	45.01%Esox masquinongy	–	–
ATP8	3	43.25%	2.81	0.065	41.07%Esox masquinongy	42.26%	46.43%Esox lucius	–	–
ATP6	3	44.57%	1.16	0.026	43.70%Esox niger	44.13%	45.89%Esox lucius	–	–
COX3	3	47.11%	1.87	0.040	45.04%Esox niger	47.64%	48.66%Esox lucius	–	–
ND3	3	43.94%	2.33	0.053	41.26%Esox niger	44.99%	45.56%Esox lucius	–	–
ND4L	3	50.06%	0.19	0.004	49.83%Esox lucius	50.17%	50.17%Esox masquinongy	–	–
ND4	3	44.00%	0.34	0.008	43.74%Esox niger	43.88%	44.39%Esox lucius	–	–
ND5	3	42.35%	0.26	0.006	42.09%Esox niger	42.36%	42.60%Esox masquinongy	–	–
ND6	3	43.93%	2.11	0.048	42.53%Esox niger	42.91%	46.36%Esox masquinongy	–	–
CYTB	3	42.74%	0.95	0.022	41.69%Esox niger	43.01%	43.54%Esox lucius	–	–

Genera of Esocidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Esocidae

Esox	3	43.45%	0.78	0.018	42.55%Esox niger	43.88%	43.91%Esox masquinongy	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Esocidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Esocidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.