order · mtDNA statistics

Esociformes

5 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

43.2%

mean GC, whole genome

SD 0.7, range 42.5–43.9%

16,775

median genome length, bp

Range 16,695–17,157 bp

families

Regions

GC content of each region across Esociformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	5	43.19%	0.68	0.016	42.55%Esox niger	43.07%	43.91%Esox masquinongy	0.78	0.12
Protein-coding	5	43.61%	0.89	0.021	42.35%Dallia pectoralis	43.45%	44.47%Esox masquinongy	0.74	0.15
All rRNA	5	45.11%	0.89	0.020	43.74%Esox niger	45.53%	45.83%Dallia pectoralis	0.50	0.4
All tRNA	5	44.23%	0.20	0.004	44.00%Umbra limi	44.21%	44.52%Esox lucius	0.56	0.32
12S rRNA	5	45.92%	1.18	0.026	44.11%Esox niger	45.92%	46.97%Umbra limi	−0.32	0.61
16S rRNA	5	44.65%	1.12	0.025	43.38%Umbra limi	45.18%	45.84%Esox lucius	0.81	0.1
D-loop	5	33.10%	3.03	0.091	29.39%Esox niger	33.45%	37.53%Dallia pectoralis	−0.24	0.7
ND1	5	44.87%	1.22	0.027	43.59%Umbra limi	44.72%	46.77%Esox lucius	0.56	0.33
ND2	5	44.25%	0.84	0.019	43.13%Esox niger	44.48%	45.05%Esox lucius	0.57	0.31
COX1	5	43.88%	1.12	0.026	43.00%Esox niger	43.13%	45.47%Umbra limi	−0.29	0.64
COX2	5	42.06%	1.76	0.042	40.67%Umbra limi	41.39%	45.01%Esox masquinongy	0.64	0.24
ATP8	5	40.36%	4.68	0.116	33.93%Dallia pectoralis	41.07%	46.43%Esox lucius	0.65	0.24
ATP6	5	43.93%	1.24	0.028	42.54%Umbra limi	43.70%	45.89%Esox lucius	0.86	0.06
COX3	5	46.02%	2.14	0.046	43.31%Dallia pectoralis	45.42%	48.66%Esox lucius	0.79	0.12
ND3	5	44.59%	2.36	0.053	41.26%Esox niger	44.99%	47.58%Umbra limi	−0.08	0.9
ND4L	5	48.75%	1.80	0.037	46.46%Dallia pectoralis	49.83%	50.17%Esox masquinongy	0.72	0.17
ND4	5	43.22%	1.12	0.026	41.78%Umbra limi	43.74%	44.39%Esox lucius	0.88	0.05
ND5	5	41.62%	1.03	0.025	40.29%Dallia pectoralis	42.09%	42.60%Esox masquinongy	0.80	0.1
ND6	5	44.44%	2.05	0.046	42.53%Esox niger	43.49%	46.93%Umbra limi	−0.20	0.75
CYTB	5	42.29%	1.60	0.038	39.75%Dallia pectoralis	43.01%	43.54%Esox lucius	0.31	0.62

Families of Esociformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Esociformes

Esocidae	3	43.45%	0.78	0.018	42.55%Esox niger	43.88%	43.91%Esox masquinongy	–	–
Umbridae	2	42.81%	0.37	0.009	42.55%Dallia pectoralis	42.81%	43.07%Umbra limi	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Esociformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Esociformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.