Dallia pectoralis

Alaska blackfish

Maximum lifespan

8 yr

AnAge record

mtDNA size

17,157 bp

RefSeq NC_004592.1

GC content

42.55%

Whole genome

Non-coding

1,598 bp

D-loop 1,191 bp

Where Alaska blackfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Alaska blackfish has the 1,720th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,157 bp

GC skew (G − C) / (G + C): −0.273
AT skew (A − T) / (A + T): −0.024

Life history

Maximum lifespan: 8 years
Adult weight: 201.3 g
Female sexual maturity: 2.5 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04014)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,157 bp

Protein-coding11,406 bp

12S rRNA939 bp

16S rRNA1,660 bp

All tRNA1,554 bp

D-loop1,191 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dallia pectoralis genes

ND1NADH dehydrogenase subunit 1	975 bp	23.2%	32.1%	14.9%	29.8%	44.72%	−0.335	−0.161
ND2NADH dehydrogenase subunit 2	1,050 bp	25.1%	31.2%	12.5%	31.1%	43.62%	−0.428	−0.108
COX1Cytochrome c oxidase subunit I	1,551 bp	24.2%	32.6%	17.1%	26.0%	43.13%	−0.208	−0.147
COX2Cytochrome c oxidase subunit II	691 bp	27.9%	31.1%	15.3%	25.6%	40.96%	−0.251	−0.054
ATP8ATP synthase F0 subunit 8	168 bp	32.7%	33.3%	8.9%	25.0%	33.93%	−0.474	−0.009
ATP6ATP synthase F0 subunit 6	682 bp	22.9%	33.7%	13.2%	30.2%	43.40%	−0.392	−0.192
COX3Cytochrome c oxidase subunit III	785 bp	24.7%	32.0%	15.7%	27.6%	43.31%	−0.276	−0.128
ND3NADH dehydrogenase subunit 3	349 bp	21.8%	34.7%	12.6%	30.9%	43.55%	−0.421	−0.228
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	32.0%	13.8%	32.7%	46.47%	−0.406	−0.195
ND4NADH dehydrogenase subunit 4	1,381 bp	27.1%	30.6%	14.1%	28.2%	42.29%	−0.332	−0.061
ND5NADH dehydrogenase subunit 5	1,839 bp	27.4%	32.3%	12.5%	27.8%	40.29%	−0.382	−0.082
ND6NADH dehydrogenase subunit 6	522 bp	39.1%	17.4%	13.0%	30.5%	43.49%	−0.401	+0.383
CYTBCytochrome b	1,137 bp	26.0%	34.2%	13.6%	26.1%	39.75%	−0.314	−0.136
12S rRNA12S ribosomal RNA	939 bp	31.0%	22.0%	21.1%	25.9%	46.97%	−0.102	+0.169
16S rRNA16S ribosomal RNA	1,660 bp	32.8%	22.0%	20.8%	24.3%	45.18%	−0.077	+0.196
D-loopControl region (D-loop)	1,191 bp	32.0%	30.5%	14.1%	23.4%	37.53%	−0.248	+0.024

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%

UUU176

UUC76

Leu L17.7%

UUA164

UUG23

CUU195

CUC124

CUA137

CUG30

Ile I7.4%

AUU205

AUC77

Met M4.1%

AUA119

AUG38

Val V5.4%

GUU79

GUC30

GUA74

GUG23

Ser S6.5%

UCU81

UCC67

UCA46

UCG1

AGU14

AGC40

Pro P5.8%

CCU72

CCC109

CCA33

CCG8

Thr T7.8%

ACU59

ACC120

ACA101

ACG17

Ala A8.5%

GCU88

GCC153

GCA76

GCG8

Tyr Y2.9%

UAU69

UAC42

His H2.7%

CAU39

CAC65

Gln Q2.5%

CAA83

CAG13

Asn N3.1%

AAU81

AAC38

Lys K2.0%

AAA75

AAG3

Asp D1.8%

GAU26

GAC43

Glu E2.6%

GAA82

GAG18

Cys C0.8%

UGU20

UGC10

Trp W3.2%

UGA106

UGG14

Arg R2.0%

CGU15

CGC21

CGA29

CGG10

Gly G6.1%

GGU28

GGC98

GGA65

GGG43

Stop 0.2%

UAA6

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_004592.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dallia pectoralis (NC_004592.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,007	939 bp	+	47.0%
tRNA-Val	Transfer RNA	1,008	1,078	71 bp	+	–
16S rRNA	Ribosomal RNA	1,079	2,738	1,660 bp	+	45.2%
tRNA-Leu (UUR)	Transfer RNA	2,739	2,813	75 bp	+	–
ND1	Protein-coding gene	2,814	3,788	975 bp	+	44.7%
tRNA-Ile	Transfer RNA	3,792	3,863	72 bp	+	–
tRNA-Gln	Transfer RNA	3,861	3,931	71 bp	−	–
tRNA-Met	Transfer RNA	3,931	3,999	69 bp	+	–
ND2	Protein-coding gene	4,000	5,049	1,050 bp	+	43.6%
tRNA-Trp	Transfer RNA	5,051	5,120	70 bp	+	–
tRNA-Ala	Transfer RNA	5,122	5,190	69 bp	−	–
tRNA-Asn	Transfer RNA	5,192	5,264	73 bp	−	–
tRNA-Cys	Transfer RNA	5,296	5,361	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,362	5,432	71 bp	−	–
COX1	Protein-coding gene	5,434	6,984	1,551 bp	+	43.1%
tRNA-Ser (UCN)	Transfer RNA	6,985	7,055	71 bp	−	–
tRNA-Asp	Transfer RNA	7,061	7,134	74 bp	+	–
COX2	Protein-coding gene	7,138	7,828	691 bp	+	41.0%
tRNA-Lys	Transfer RNA	7,829	7,902	74 bp	+	–
ATP8	Protein-coding gene	7,904	8,071	168 bp	+	33.9%
ATP6	Protein-coding gene	8,062	8,743	682 bp	+	43.4%
COX3	Protein-coding gene	8,744	9,528	785 bp	+	43.3%
tRNA-Gly	Transfer RNA	9,529	9,600	72 bp	+	–
ND3	Protein-coding gene	9,601	9,949	349 bp	+	43.6%
tRNA-Arg	Transfer RNA	9,950	10,019	70 bp	+	–
ND4L	Protein-coding gene	10,020	10,316	297 bp	+	46.5%
ND4	Protein-coding gene	10,310	11,690	1,381 bp	+	42.3%
tRNA-His	Transfer RNA	11,691	11,758	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,759	11,827	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,830	11,902	73 bp	+	–
ND5	Protein-coding gene	11,903	13,741	1,839 bp	+	40.3%
ND6	Protein-coding gene	13,738	14,259	522 bp	−	43.5%
tRNA-Glu	Transfer RNA	14,260	14,330	71 bp	−	–
CYTB	Protein-coding gene	14,333	15,469	1,137 bp	+	39.8%
tRNA-Pro	Transfer RNA	15,524	15,593	70 bp	−	–
D-loop	Control region	15,594	16,784	1,191 bp	–	37.5%
tRNA-Thr	Transfer RNA	16,785	16,855	71 bp	+	–