Umbra limi
Central mudminnow
GC content
43.07%
Whole genome
Non-coding
1,237 bp
D-loop 1,181 bp
Where Central mudminnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Central mudminnow has the 2,103rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,795 bp
- GC skew (G − C) / (G + C)
- −0.272
- AT skew (A − T) / (A + T)
- +0.001
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,795 bp
Protein-coding11,419 bp
12S rRNA941 bp
16S rRNA1,662 bp
All tRNA1,550 bp
D-loop1,181 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.59% | −0.285 | −0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 44.48% | −0.443 | −0.053 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 45.47% | −0.220 | −0.102 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.67% | −0.238 | −0.029 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.531 | −0.038 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.54% | −0.436 | −0.089 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.42% | −0.261 | −0.096 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 47.58% | −0.437 | −0.141 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.314 | −0.121 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 41.78% | −0.355 | −0.010 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 40.77% | −0.361 | −0.034 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.469 | +0.444 | |||||
| CYTBCytochrome b | 1,137 bp | 43.45% | −0.340 | −0.123 | |||||
| 12S rRNA12S ribosomal RNA | 941 bp | 46.97% | −0.081 | +0.158 | |||||
| 16S rRNA16S ribosomal RNA | 1,662 bp | 43.38% | −0.079 | +0.205 | |||||
| D-loopControl region (D-loop) | 1,181 bp | 33.70% | −0.231 | −0.040 |
Codon usage
Counts per codon, darker is more frequent3,813 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU155
UUC84
Leu L17.2%
UUA156
UUG38
CUU152
CUC119
CUA143
CUG46
Ile I7.7%
AUU205
AUC90
Met M4.4%
AUA127
AUG39
Val V5.5%
GUU61
GUC43
GUA74
GUG31
Ser S6.6%
UCU57
UCC81
UCA52
UCG3
AGU22
AGC37
Pro P5.8%
CCU51
CCC119
CCA37
CCG13
Thr T7.7%
ACU72
ACC112
ACA100
ACG9
Ala A8.6%
GCU64
GCC164
GCA84
GCG15
Tyr Y3.0%
UAU63
UAC50
His H2.6%
CAU30
CAC71
Gln Q2.7%
CAA89
CAG13
Asn N3.3%
AAU54
AAC71
Lys K2.1%
AAA70
AAG10
Asp D1.9%
GAU24
GAC50
Glu E2.6%
GAA80
GAG18
Cys C0.7%
UGU9
UGC18
Trp W3.1%
UGA106
UGG13
Arg R1.9%
CGU9
CGC18
CGA41
CGG6
Gly G6.1%
GGU31
GGC92
GGA67
GGG44
Stop 0.3%
UAA7
UAG3
AGA0
AGG1
Genome map
38 annotated features in NC_028282.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,009 | 941 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,010 | 1,081 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,082 | 2,743 | 1,662 bp | + | 43.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,744 | 2,818 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,819 | 3,793 | 975 bp | + | 43.6% |
| tRNA-Ile | Transfer RNA | 3,797 | 3,868 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,866 | 3,936 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,936 | 4,004 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,005 | 5,054 | 1,050 bp | + | 44.5% |
| tRNA-Trp | Transfer RNA | 5,053 | 5,123 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,126 | 5,194 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,195 | 5,267 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,303 | 5,368 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,369 | 5,438 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,440 | 6,996 | 1,557 bp | + | 45.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,988 | 7,058 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,061 | 7,132 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,138 | 7,828 | 691 bp | + | 40.7% |
| tRNA-Lys | Transfer RNA | 7,829 | 7,902 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,904 | 8,071 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,062 | 8,745 | 684 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,745 | 9,530 | 786 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,530 | 9,599 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,600 | 9,950 | 351 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 9,949 | 10,018 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,019 | 10,315 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,309 | 11,689 | 1,381 bp | + | 41.8% |
| tRNA-His | Transfer RNA | 11,690 | 11,758 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,759 | 11,827 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,829 | 11,901 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,902 | 13,743 | 1,842 bp | + | 40.8% |
| ND6 | Protein-coding gene | 13,740 | 14,261 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,262 | 14,330 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,334 | 15,470 | 1,137 bp | + | 43.5% |
| tRNA-Thr | Transfer RNA | 15,474 | 15,545 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,545 | 15,614 | 70 bp | − | – |
| D-loop | Control region | 15,615 | 16,795 | 1,181 bp | – | 33.7% |