family · mtDNA statistics

Eublepharidae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

42.1%

mean GC, whole genome

SD 4.7, range 36.8–45.8%

17,110

median genome length, bp

Range 17,043–17,462 bp

genera

Regions

GC content of each region across Eublepharidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	42.14%	4.70	0.111	36.84%Eublepharis macularius	43.77%	45.80%Hemitheconyx caudicinctus	–	–
Protein-coding	3	42.23%	5.39	0.128	36.18%Eublepharis macularius	44.01%	46.51%Hemitheconyx caudicinctus	–	–
All rRNA	3	44.16%	3.56	0.081	40.48%Eublepharis macularius	44.40%	47.59%Hemitheconyx caudicinctus	–	–
All tRNA	3	42.33%	2.69	0.064	39.49%Eublepharis macularius	42.65%	44.85%Hemitheconyx caudicinctus	–	–
12S rRNA	3	46.24%	4.04	0.087	42.93%Eublepharis macularius	45.04%	50.74%Hemitheconyx caudicinctus	–	–
16S rRNA	3	42.88%	3.45	0.081	39.01%Eublepharis macularius	44.00%	45.63%Hemitheconyx caudicinctus	–	–
D-loop	2	46.97%	6.64	0.141	42.27%Coleonyx variegatus	46.97%	51.67%Eublepharis macularius	–	–
ND1	3	42.71%	4.59	0.107	37.68%Eublepharis macularius	43.79%	46.67%Hemitheconyx caudicinctus	–	–
ND2	3	42.28%	5.22	0.123	36.60%Eublepharis macularius	43.38%	46.86%Hemitheconyx caudicinctus	–	–
COX1	3	44.78%	4.26	0.095	39.87%Eublepharis macularius	46.91%	47.56%Hemitheconyx caudicinctus	–	–
COX2	3	41.96%	6.53	0.156	35.33%Eublepharis macularius	42.15%	48.39%Hemitheconyx caudicinctus	–	–
ATP8	3	39.50%	5.06	0.128	33.94%Eublepharis macularius	40.74%	43.83%Hemitheconyx caudicinctus	–	–
ATP6	3	41.57%	6.65	0.160	34.56%Eublepharis macularius	42.35%	47.79%Hemitheconyx caudicinctus	–	–
COX3	3	44.13%	5.60	0.127	38.14%Eublepharis macularius	45.03%	49.23%Hemitheconyx caudicinctus	–	–
ND3	3	42.75%	6.11	0.143	35.84%Eublepharis macularius	45.00%	47.41%Coleonyx variegatus	–	–
ND4L	3	42.09%	2.94	0.070	38.72%Eublepharis macularius	43.43%	44.11%Hemitheconyx caudicinctus	–	–
ND4	3	41.86%	6.28	0.150	34.78%Eublepharis macularius	44.05%	46.75%Hemitheconyx caudicinctus	–	–
ND5	3	40.67%	5.85	0.144	33.98%Eublepharis macularius	43.16%	44.85%Hemitheconyx caudicinctus	–	–
ND6	3	39.54%	5.86	0.148	32.95%Eublepharis macularius	41.57%	44.12%Hemitheconyx caudicinctus	–	–
CYTB	3	41.66%	5.16	0.124	35.74%Eublepharis macularius	43.99%	45.25%Hemitheconyx caudicinctus	–	–

Genera of Eublepharidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Eublepharidae

Coleonyx	1	43.77%	–	–	43.77%Coleonyx variegatus	43.77%	43.77%Coleonyx variegatus	–	–
Hemitheconyx	1	45.80%	–	–	45.80%Hemitheconyx caudicinctus	45.80%	45.80%Hemitheconyx caudicinctus	–	–
Eublepharis	1	36.84%	–	–	36.84%Eublepharis macularius	36.84%	36.84%Eublepharis macularius	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Eublepharidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Eublepharidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.