Hemitheconyx caudicinctus
African fat-tailed gecko
GC content
45.80%
Whole genome
Non-coding
1,814 bp
Including the D-loop
Where African fat-tailed gecko sits among 2,335 species
Whole-genome GC content against maximum lifespan. African fat-tailed gecko has the 1,143rd longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome17,043 bp
- GC skew (G − C) / (G + C)
- −0.349
- AT skew (A − T) / (A + T)
- +0.105
Life history
- Maximum lifespan
- 16.2 years
- Adult weight
- 39.2 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03469)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,043 bp
Protein-coding11,318 bp
12S rRNA946 bp
16S rRNA1,523 bp
All tRNA1,476 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 960 bp | 46.67% | −0.424 | +0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 46.86% | −0.459 | +0.115 | |||||
| COX1Cytochrome c oxidase subunit I | 1,575 bp | 47.56% | −0.295 | −0.022 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 48.39% | −0.317 | +0.122 | |||||
| ATP8ATP synthase F0 subunit 8 | 162 bp | 43.83% | −0.408 | +0.099 | |||||
| ATP6ATP synthase F0 subunit 6 | 680 bp | 47.79% | −0.415 | +0.065 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 49.24% | −0.332 | +0.055 | |||||
| ND3NADH dehydrogenase subunit 3 | 340 bp | 45.00% | −0.307 | +0.016 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.11% | −0.344 | +0.157 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,369 bp | 46.75% | −0.500 | +0.062 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,788 bp | 44.86% | −0.456 | +0.108 | |||||
| ND6NADH dehydrogenase subunit 6 | 510 bp | 44.12% | −0.458 | +0.467 | |||||
| CYTBCytochrome b | 1,136 bp | 45.25% | −0.412 | +0.019 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.74% | −0.179 | +0.193 | |||||
| 16S rRNA16S ribosomal RNA | 1,523 bp | 45.63% | −0.252 | +0.292 |
Codon usage
Counts per codon, darker is more frequent3,776 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.3%
UUU77
UUC122
Leu L17.2%
UUA97
UUG22
CUU113
CUC131
CUA232
CUG54
Ile I7.2%
AUU109
AUC162
Met M5.0%
AUA135
AUG54
Val V4.6%
GUU58
GUC49
GUA40
GUG25
Ser S6.7%
UCU34
UCC77
UCA71
UCG8
AGU8
AGC56
Pro P5.8%
CCU20
CCC91
CCA94
CCG14
Thr T10.8%
ACU62
ACC163
ACA166
ACG17
Ala A8.1%
GCU45
GCC156
GCA95
GCG9
Tyr Y2.9%
UAU39
UAC72
His H2.9%
CAU18
CAC90
Gln Q2.4%
CAA75
CAG15
Asn N3.5%
AAU33
AAC100
Lys K2.4%
AAA78
AAG13
Asp D1.5%
GAU16
GAC40
Glu E2.3%
GAA61
GAG26
Cys C0.8%
UGU7
UGC24
Trp W2.6%
UGA76
UGG23
Arg R2.0%
CGU6
CGC22
CGA39
CGG8
Gly G5.9%
GGU18
GGC95
GGA60
GGG48
Stop 0.2%
UAA3
UAG4
AGA0
AGG1
Genome map
37 annotated features in NC_018368.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 67 | 67 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,013 | 946 bp | + | 50.7% |
| tRNA-Val | Transfer RNA | 1,014 | 1,082 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,605 | 1,523 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,606 | 2,679 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,680 | 3,639 | 960 bp | + | 46.7% |
| tRNA-Ile | Transfer RNA | 3,642 | 3,713 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,710 | 3,761 | 52 bp | − | – |
| tRNA-Met | Transfer RNA | 3,759 | 3,827 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,829 | 4,878 | 1,050 bp | + | 46.9% |
| tRNA-Trp | Transfer RNA | 4,888 | 4,954 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,954 | 5,022 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,024 | 5,096 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,122 | 5,187 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,188 | 5,250 | 63 bp | − | – |
| COX1 | Protein-coding gene | 5,252 | 6,826 | 1,575 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 6,793 | 6,864 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,865 | 6,930 | 66 bp | + | – |
| COX2 | Protein-coding gene | 6,931 | 7,614 | 684 bp | + | 48.4% |
| tRNA-Lys | Transfer RNA | 7,626 | 7,690 | 65 bp | + | – |
| ATP8 | Protein-coding gene | 7,693 | 7,854 | 162 bp | + | 43.8% |
| ATP6 | Protein-coding gene | 7,845 | 8,524 | 680 bp | + | 47.8% |
| COX3 | Protein-coding gene | 8,525 | 9,308 | 784 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,309 | 9,376 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,377 | 9,716 | 340 bp | + | 45.0% |
| tRNA-Arg | Transfer RNA | 9,717 | 9,787 | 71 bp | + | – |
| ND4L | Protein-coding gene | 9,789 | 10,085 | 297 bp | + | 44.1% |
| ND4 | Protein-coding gene | 10,079 | 11,447 | 1,369 bp | + | 46.8% |
| tRNA-His | Transfer RNA | 11,448 | 11,512 | 65 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,514 | 11,573 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,573 | 11,644 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,645 | 13,432 | 1,788 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,436 | 13,945 | 510 bp | − | 44.1% |
| tRNA-Glu | Transfer RNA | 13,946 | 14,014 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,022 | 15,157 | 1,136 bp | + | 45.3% |
| tRNA-Thr | Transfer RNA | 15,158 | 15,226 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,227 | 15,293 | 67 bp | − | – |