family · mtDNA statistics

Gliridae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

36.1%

mean GC, whole genome

SD 1.4, range 34.6–37.4%

16,627

median genome length, bp

Range 16,602–16,731 bp

genera

Regions

GC content of each region across Gliridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	36.07%	1.45	0.040	34.56%Muscardinus avellanarius	36.19%	37.45%Eliomys quercinus	–	–
Protein-coding	3	36.21%	1.70	0.047	34.46%Muscardinus avellanarius	36.33%	37.85%Eliomys quercinus	–	–
All rRNA	3	36.97%	0.69	0.019	36.19%Muscardinus avellanarius	37.25%	37.48%Eliomys quercinus	–	–
All tRNA	3	33.74%	1.07	0.032	32.74%Muscardinus avellanarius	33.60%	34.87%Eliomys quercinus	–	–
12S rRNA	3	39.62%	1.45	0.037	38.03%Muscardinus avellanarius	39.94%	40.88%Glis glis	–	–
16S rRNA	3	35.35%	0.54	0.015	35.03%Glis glis	35.06%	35.97%Eliomys quercinus	–	–
D-loop	3	36.47%	0.70	0.019	35.78%Glis glis	36.45%	37.19%Muscardinus avellanarius	–	–
ND1	3	37.43%	1.63	0.044	35.56%Muscardinus avellanarius	38.12%	38.60%Eliomys quercinus	–	–
ND2	3	34.50%	3.06	0.089	31.00%Muscardinus avellanarius	35.80%	36.70%Glis glis	–	–
COX1	3	39.12%	1.31	0.033	38.13%Glis glis	38.63%	40.60%Eliomys quercinus	–	–
COX2	3	36.16%	1.69	0.047	34.21%Muscardinus avellanarius	36.99%	37.28%Eliomys quercinus	–	–
ATP8	3	32.13%	1.21	0.038	30.73%Eliomys quercinus	32.81%	32.84%Glis glis	–	–
ATP6	3	34.95%	2.62	0.075	33.04%Muscardinus avellanarius	33.87%	37.94%Eliomys quercinus	–	–
COX3	3	38.48%	1.71	0.045	37.24%Glis glis	37.76%	40.43%Eliomys quercinus	–	–
ND3	3	34.55%	1.19	0.034	33.82%Glis glis	33.91%	35.92%Eliomys quercinus	–	–
ND4L	3	31.87%	3.75	0.118	27.61%Muscardinus avellanarius	33.33%	34.68%Glis glis	–	–
ND4	3	33.96%	2.90	0.085	30.84%Muscardinus avellanarius	34.47%	36.57%Eliomys quercinus	–	–
ND5	3	35.36%	2.01	0.057	33.55%Muscardinus avellanarius	34.99%	37.53%Eliomys quercinus	–	–
ND6	3	34.67%	0.95	0.027	33.71%Muscardinus avellanarius	34.67%	35.62%Eliomys quercinus	–	–
CYTB	3	38.81%	0.85	0.022	37.84%Muscardinus avellanarius	39.21%	39.39%Eliomys quercinus	–	–

Genera of Gliridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Gliridae

Muscardinus	1	34.56%	–	–	34.56%Muscardinus avellanarius	34.56%	34.56%Muscardinus avellanarius	–	–
Glis	1	36.19%	–	–	36.19%Glis glis	36.19%	36.19%Glis glis	–	–
Eliomys	1	37.45%	–	–	37.45%Eliomys quercinus	37.45%	37.45%Eliomys quercinus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Gliridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Gliridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.