family · mtDNA statistics

Macropodidae

4 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

39.3%

mean GC, whole genome

SD 0.3, range 38.8–39.6%

16,888

median genome length, bp

Range 16,881–16,896 bp

genera

Regions

GC content of each region across Macropodidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	39.26%	0.32	0.008	38.85%Lagorchestes hirsutus	39.30%	39.59%Macropus giganteus	–	–
Protein-coding	4	40.45%	0.30	0.007	40.10%Lagorchestes hirsutus	40.47%	40.79%Macropus giganteus	–	–
All rRNA	4	38.93%	0.73	0.019	38.06%Lagorchestes hirsutus	38.95%	39.76%Macropus giganteus	–	–
All tRNA	4	35.26%	0.27	0.008	35.00%Macropus giganteus	35.21%	35.61%Macropus fuliginosus	–	–
12S rRNA	4	40.12%	0.44	0.011	39.52%Lagorchestes hirsutus	40.19%	40.57%Macropus giganteus	–	–
16S rRNA	4	38.21%	0.94	0.025	37.18%Lagorchestes hirsutus	38.19%	39.27%Macropus giganteus	–	–
D-loop	4	33.87%	0.60	0.018	33.08%Lagorchestes hirsutus	34.00%	34.41%Macropus fuliginosus	–	–
ND1	4	41.22%	0.52	0.013	40.65%Macropus fuliginosus	41.22%	41.80%Macropus giganteus	–	–
ND2	4	40.11%	0.52	0.013	39.54%Macropus giganteus	40.07%	40.78%Osphranter robustus	–	–
COX1	4	41.29%	1.06	0.026	39.82%Lagorchestes hirsutus	41.63%	42.09%Macropus fuliginosus	–	–
COX2	4	38.29%	1.30	0.034	36.66%Lagorchestes hirsutus	38.34%	39.83%Macropus fuliginosus	–	–
ATP8	4	35.00%	1.13	0.032	33.33%Osphranter robustus	35.48%	35.71%Lagorchestes hirsutus	–	–
ATP6	4	39.68%	0.49	0.012	39.06%Macropus fuliginosus	39.72%	40.23%Macropus giganteus	–	–
COX3	4	43.40%	0.74	0.017	42.60%Macropus fuliginosus	43.30%	44.39%Lagorchestes hirsutus	–	–
ND3	4	40.52%	2.05	0.051	38.40%Lagorchestes hirsutus	40.44%	42.82%Macropus fuliginosus	–	–
ND4L	4	39.98%	0.97	0.024	38.72%Lagorchestes hirsutus	40.24%	40.74%Osphranter robustus	–	–
ND4	4	39.66%	0.40	0.010	39.19%Lagorchestes hirsutus	39.70%	40.06%Macropus fuliginosus	–	–
ND5	4	39.61%	0.48	0.012	39.19%Osphranter robustus	39.47%	40.30%Macropus giganteus	–	–
ND6	4	36.41%	1.26	0.035	35.12%Osphranter robustus	36.21%	38.10%Lagorchestes hirsutus	–	–
CYTB	4	43.72%	0.50	0.011	43.28%Macropus fuliginosus	43.59%	44.42%Macropus giganteus	–	–

Genera of Macropodidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Macropodidae

Macropus	2	39.51%	0.11	0.003	39.43%Macropus fuliginosus	39.51%	39.59%Macropus giganteus	–	–
Lagorchestes	1	38.85%	–	–	38.85%Lagorchestes hirsutus	38.85%	38.85%Lagorchestes hirsutus	–	–
Osphranter	1	39.18%	–	–	39.18%Osphranter robustus	39.18%	39.18%Osphranter robustus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Macropodidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Macropodidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.