MitoAge

Lagorchestes hirsutus

Rufous hare-wallaby

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Maximum lifespan
13.2 yr
AnAge record
mtDNA size
16,889 bp
RefSeq NC_008136.1
GC content
38.85%
Whole genome
Non-coding
1,568 bp
D-loop 1,433 bp

Where Rufous hare-wallaby sits among 2,335 species

Whole-genome GC content against maximum lifespan. Rufous hare-wallaby has the 1,337th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Rufous hare-wallaby
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,889 bp
GC skew (G − C) / (G + C)
−0.346
AT skew (A − T) / (A + T)
+0.083

Life history

Maximum lifespan
13.2 years
Adult weight
1.3 kg
Female sexual maturity
330 days
Litter or clutch size
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02523)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,889 bp
Protein-coding11,328 bp
12S rRNA949 bp
16S rRNA1,560 bp
All tRNA1,487 bp
D-loop1,433 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.0%29.0%11.7%29.3%40.96%−0.429+0.016
ND2NADH dehydrogenase subunit 21,047 bp33.3%26.7%8.3%31.6%39.92%−0.584+0.110
COX1Cytochrome c oxidase subunit I1,542 bp28.3%31.9%15.9%23.9%39.82%−0.202−0.060
COX2Cytochrome c oxidase subunit II682 bp32.7%30.6%14.7%22.0%36.66%−0.200+0.032
ATP8ATP synthase F0 subunit 8210 bp39.5%24.8%6.2%29.5%35.71%−0.653+0.230
ATP6ATP synthase F0 subunit 6681 bp31.0%29.2%10.0%29.8%39.79%−0.498+0.029
COX3Cytochrome c oxidase subunit III784 bp25.5%30.1%15.1%29.3%44.39%−0.322−0.083
ND3NADH dehydrogenase subunit 3349 bp29.5%32.1%10.3%28.1%38.40%−0.463−0.042
ND4LNADH dehydrogenase subunit 4L297 bp27.9%33.3%12.1%26.6%38.72%−0.374−0.088
ND4NADH dehydrogenase subunit 41,378 bp32.7%28.2%10.3%28.9%39.19%−0.474+0.074
ND5NADH dehydrogenase subunit 51,809 bp33.2%27.3%10.3%29.1%39.47%−0.476+0.098
ND6NADH dehydrogenase subunit 6504 bp44.6%17.3%7.3%30.8%38.10%−0.615+0.442
CYTBCytochrome b1,146 bp29.4%26.9%13.0%30.7%43.72%−0.405+0.045
12S rRNA12S ribosomal RNA949 bp37.7%22.8%17.8%21.7%39.52%−0.099+0.247
16S rRNA16S ribosomal RNA1,560 bp37.2%25.6%16.3%20.9%37.18%−0.124+0.186
D-loopControl region (D-loop)1,433 bp37.1%29.9%10.7%22.4%33.08%−0.354+0.107

Codon usage

Counts per codon, darker is more frequent

3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU88
UUC146
Leu L15.8%
UUA116
UUG26
CUU67
CUC95
CUA279
CUG17
Ile I9.4%
AUU170
AUC188
Met M5.4%
AUA168
AUG36
Val V5.0%
GUU47
GUC42
GUA87
GUG14
Ser S7.6%
UCU54
UCC74
UCA109
UCG4
AGU14
AGC32
Pro P5.3%
CCU52
CCC49
CCA96
CCG3
Thr T7.9%
ACU61
ACC99
ACA132
ACG9
Ala A6.8%
GCU83
GCC92
GCA80
GCG3
Tyr Y3.7%
UAU59
UAC81
His H2.8%
CAU40
CAC65
Gln Q2.4%
CAA84
CAG6
Asn N4.0%
AAU55
AAC96
Lys K2.5%
AAA91
AAG4
Asp D1.8%
GAU28
GAC41
Glu E2.3%
GAA77
GAG11
Cys C0.8%
UGU15
UGC16
Trp W2.7%
UGA93
UGG11
Arg R1.8%
CGU13
CGC6
CGA47
CGG1
Gly G5.6%
GGU36
GGC74
GGA82
GGG21
Stop 0.2%
UAA6
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_008136.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA721,020949 bp+39.5%
tRNA-ValTransfer RNA1,0221,09069 bp+–
16S rRNARibosomal RNA1,0912,6501,560 bp+37.2%
tRNA-Leu (UUR)Transfer RNA2,6512,72575 bp+–
ND1Protein-coding gene2,7273,683957 bp+41.0%
tRNA-IleTransfer RNA3,6843,74966 bp+–
tRNA-GlnTransfer RNA3,7483,81972 bp−–
tRNA-MetTransfer RNA3,8193,87860 bp+–
ND2Protein-coding gene3,8884,9341,047 bp+39.9%
tRNA-AlaTransfer RNA4,9325,00069 bp−–
tRNA-CysTransfer RNA5,0115,07565 bp−–
tRNA-TrpTransfer RNA5,0795,14971 bp+–
tRNA-AsnTransfer RNA5,2365,30772 bp−–
tRNA-TyrTransfer RNA5,3115,37868 bp−–
COX1Protein-coding gene5,3806,9211,542 bp+39.8%
tRNA-Ser (UCN)Transfer RNA6,9256,99369 bp−–
tRNA-AspTransfer RNA6,9967,06570 bp+–
COX2Protein-coding gene7,0677,748682 bp+36.7%
tRNA-LysTransfer RNA7,7497,81264 bp+–
ATP8Protein-coding gene7,8138,022210 bp+35.7%
ATP6Protein-coding gene7,9778,657681 bp+39.8%
COX3Protein-coding gene8,6579,440784 bp+44.4%
tRNA-GlyTransfer RNA9,4419,50565 bp+–
ND3Protein-coding gene9,5069,854349 bp+38.4%
tRNA-ArgTransfer RNA9,8559,92369 bp+–
ND4LProtein-coding gene9,92410,220297 bp+38.7%
ND4Protein-coding gene10,21411,5911,378 bp+39.2%
tRNA-HisTransfer RNA11,59211,66069 bp+–
tRNA-Ser (AGY)Transfer RNA11,66111,71959 bp+–
tRNA-Leu (CUN)Transfer RNA11,71811,78972 bp+–
ND5Protein-coding gene11,79013,5981,809 bp+39.5%
ND6Protein-coding gene13,59514,098504 bp−38.1%
tRNA-GluTransfer RNA14,09914,16769 bp−–
CYTBProtein-coding gene14,17115,3161,146 bp+43.7%
tRNA-ThrTransfer RNA15,32415,38562 bp+–
tRNA-ProTransfer RNA15,38815,45568 bp−–
D-loopControl region15,45616,8881,433 bp–33.1%

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