family · mtDNA statistics

Peramelidae

4 species in 4 genera. Every region of their mitochondrial genomes, side by side.

Group

species

34.6%

mean GC, whole genome

SD 0.7, range 33.8–35.4%

16,001

median genome length, bp

Range 15,289–16,852 bp

genera

Regions

GC content of each region across Peramelidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	34.55%	0.65	0.019	33.84%Echymipera rufescens	34.48%	35.40%Perameles gunnii	–	–
Protein-coding	4	34.80%	0.46	0.013	34.48%Echymipera rufescens	34.62%	35.49%Perameles gunnii	–	–
All rRNA	4	35.36%	0.38	0.011	34.80%Echymipera rufescens	35.49%	35.65%Isoodon macrourus	–	–
All tRNA	4	33.36%	0.12	0.004	33.21%Macrotis lagotis	33.37%	33.48%Perameles gunnii	–	–
12S rRNA	4	38.06%	0.98	0.026	36.76%Echymipera rufescens	38.27%	38.92%Macrotis lagotis	–	–
16S rRNA	4	33.74%	0.35	0.011	33.35%Macrotis lagotis	33.71%	34.20%Perameles gunnii	–	–
D-loop	2	27.55%	3.32	0.120	25.20%Echymipera rufescens	27.55%	29.89%Isoodon macrourus	–	–
ND1	4	34.15%	0.25	0.007	33.96%Perameles gunnii	34.06%	34.52%Echymipera rufescens	–	–
ND2	4	31.99%	0.61	0.019	31.23%Macrotis lagotis	32.09%	32.57%Perameles gunnii	–	–
COX1	4	36.28%	0.64	0.018	35.67%Echymipera rufescens	36.15%	37.16%Perameles gunnii	–	–
COX2	4	35.48%	1.33	0.037	33.72%Echymipera rufescens	35.63%	36.93%Isoodon macrourus	–	–
ATP8	4	29.42%	1.13	0.038	28.57%Isoodon macrourus	29.07%	30.95%Perameles gunnii	–	–
ATP6	4	34.17%	1.14	0.033	33.14%Macrotis lagotis	33.99%	35.54%Perameles gunnii	–	–
COX3	4	38.15%	0.61	0.016	37.63%Macrotis lagotis	37.97%	39.03%Perameles gunnii	–	–
ND3	4	34.14%	0.40	0.012	33.62%Isoodon macrourus	34.19%	34.58%Echymipera rufescens	–	–
ND4L	4	34.01%	0.78	0.023	33.33%Echymipera rufescens	34.01%	34.68%Perameles gunnii	–	–
ND4	4	33.82%	0.89	0.026	33.02%Echymipera rufescens	33.78%	34.69%Perameles gunnii	–	–
ND5	4	34.04%	0.38	0.011	33.66%Isoodon macrourus	34.00%	34.49%Perameles gunnii	–	–
ND6	4	33.82%	1.32	0.039	32.34%Macrotis lagotis	33.70%	35.53%Perameles gunnii	–	–
CYTB	4	37.79%	0.82	0.022	36.91%Macrotis lagotis	37.83%	38.57%Perameles gunnii	–	–

Genera of Peramelidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Peramelidae

Echymipera	1	33.84%	–	–	33.84%Echymipera rufescens	33.84%	33.84%Echymipera rufescens	–	–
Isoodon	1	34.33%	–	–	34.33%Isoodon macrourus	34.33%	34.33%Isoodon macrourus	–	–
Perameles	1	35.40%	–	–	35.40%Perameles gunnii	35.40%	35.40%Perameles gunnii	–	–
Macrotis	1	34.63%	–	–	34.63%Macrotis lagotis	34.63%	34.63%Macrotis lagotis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Peramelidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Peramelidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.