family · mtDNA statistics

Procyonidae

4 species in 4 genera. Every region of their mitochondrial genomes, side by side.

Group

species

41.0%

mean GC, whole genome

SD 1.3, range 39.6–42.6%

16,549

median genome length, bp

Range 16,388–16,623 bp

genera

Regions

GC content of each region across Procyonidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	40.96%	1.28	0.031	39.56%Procyon lotor	40.82%	42.63%Bassaricyon gabbii	–	–
Protein-coding	4	41.23%	1.55	0.038	39.47%Procyon lotor	41.11%	43.22%Bassaricyon gabbii	–	–
All rRNA	4	39.80%	0.70	0.018	38.91%Procyon lotor	39.84%	40.62%Bassaricyon gabbii	–	–
All tRNA	4	37.61%	0.41	0.011	37.10%Potos flavus	37.64%	38.06%Nasua nasua	–	–
12S rRNA	4	41.69%	1.00	0.024	40.64%Procyon lotor	41.67%	42.75%Bassaricyon gabbii	–	–
16S rRNA	4	38.65%	0.65	0.017	37.85%Procyon lotor	38.72%	39.32%Bassaricyon gabbii	–	–
D-loop	4	45.95%	3.14	0.068	43.28%Potos flavus	45.07%	50.39%Bassaricyon gabbii	–	–
ND1	4	42.26%	1.53	0.036	40.75%Procyon lotor	41.97%	44.35%Bassaricyon gabbii	–	–
ND2	4	37.96%	1.73	0.046	36.66%Procyon lotor	37.33%	40.50%Bassaricyon gabbii	–	–
COX1	4	42.76%	1.70	0.040	41.04%Procyon lotor	42.57%	44.85%Bassaricyon gabbii	–	–
COX2	4	41.23%	1.92	0.047	38.60%Procyon lotor	41.59%	43.13%Bassaricyon gabbii	–	–
ATP8	4	34.68%	2.41	0.070	31.86%Procyon lotor	34.55%	37.75%Bassaricyon gabbii	–	–
ATP6	4	41.12%	1.49	0.036	39.79%Procyon lotor	40.82%	43.03%Bassaricyon gabbii	–	–
COX3	4	44.91%	2.47	0.055	42.60%Potos flavus	44.83%	47.39%Bassaricyon gabbii	–	–
ND3	4	40.33%	1.73	0.043	38.33%Procyon lotor	40.26%	42.49%Potos flavus	–	–
ND4L	4	40.32%	1.61	0.040	38.05%Procyon lotor	40.74%	41.75%Bassaricyon gabbii	–	–
ND4	4	41.53%	2.08	0.050	39.04%Procyon lotor	41.47%	44.12%Bassaricyon gabbii	–	–
ND5	4	39.96%	1.05	0.026	39.18%Nasua nasua	39.59%	41.46%Bassaricyon gabbii	–	–
ND6	4	38.84%	1.52	0.039	37.27%Procyon lotor	38.60%	40.87%Bassaricyon gabbii	–	–
CYTB	4	42.86%	1.89	0.044	40.18%Procyon lotor	43.33%	44.59%Bassaricyon gabbii	–	–

Genera of Procyonidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Procyonidae

Nasua	1	41.07%	–	–	41.07%Nasua nasua	41.07%	41.07%Nasua nasua	–	–
Procyon	1	39.56%	–	–	39.56%Procyon lotor	39.56%	39.56%Procyon lotor	–	–
Potos	1	40.58%	–	–	40.58%Potos flavus	40.58%	40.58%Potos flavus	–	–
Bassaricyon	1	42.63%	–	–	42.63%Bassaricyon gabbii	42.63%	42.63%Bassaricyon gabbii	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Procyonidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Procyonidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.