MitoAge

Procyon lotor

Common raccoon

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Maximum lifespan
21 yr
AnAge record
mtDNA size
16,623 bp
RefSeq NC_009126.1
GC content
39.56%
Whole genome
Non-coding
1,223 bp
D-loop 1,162 bp

Where Common raccoon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Common raccoon has the 842nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Common raccoon
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,623 bp
GC skew (G − C) / (G + C)
−0.288
AT skew (A − T) / (A + T)
+0.095

Life history

Maximum lifespan
21 years
Adult weight
6 kg
Birth weight
80 g
Basal metabolic rate
10.428 W
Body temperature
38 °C
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
63 days
Litter or clutch size
4
Litters per year
1
Postnatal growth rate
0.0153 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02246)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,623 bp
Protein-coding11,346 bp
12S rRNA963 bp
16S rRNA1,585 bp
All tRNA1,513 bp
D-loop1,162 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp31.8%27.5%12.7%28.0%40.75%−0.374+0.072
ND2NADH dehydrogenase subunit 21,042 bp36.5%26.9%10.3%26.4%36.66%−0.440+0.152
COX1Cytochrome c oxidase subunit I1,545 bp28.1%30.9%17.7%23.3%41.04%−0.136−0.047
COX2Cytochrome c oxidase subunit II684 bp33.5%27.9%13.3%25.3%38.60%−0.311+0.090
ATP8ATP synthase F0 subunit 8204 bp40.7%27.5%4.9%27.0%31.86%−0.692+0.194
ATP6ATP synthase F0 subunit 6681 bp29.7%30.5%11.3%28.5%39.79%−0.432−0.015
COX3Cytochrome c oxidase subunit III784 bp27.4%29.6%15.6%27.4%42.99%−0.276−0.038
ND3NADH dehydrogenase subunit 3347 bp32.6%29.1%13.3%25.1%38.33%−0.308+0.056
ND4LNADH dehydrogenase subunit 4L297 bp29.3%32.7%12.8%25.3%38.05%−0.327−0.054
ND4NADH dehydrogenase subunit 41,378 bp32.7%28.2%11.4%27.6%39.04%−0.416+0.074
ND5NADH dehydrogenase subunit 51,821 bp33.1%27.6%11.4%28.0%39.32%−0.422+0.090
ND6NADH dehydrogenase subunit 6534 bp42.9%19.9%10.3%27.0%37.27%−0.447+0.367
CYTBCytochrome b1,140 bp30.9%28.9%12.8%27.4%40.18%−0.362+0.032
12S rRNA12S ribosomal RNA963 bp36.3%22.9%18.1%22.5%40.64%−0.110+0.226
16S rRNA16S ribosomal RNA1,585 bp37.5%24.6%17.4%20.5%37.86%−0.083+0.208
D-loopControl region (D-loop)1,162 bp30.8%24.9%17.0%27.4%44.32%−0.235+0.107

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU92
UUC141
Leu L15.6%
UUA127
UUG25
CUU69
CUC67
CUA263
CUG43
Ile I9.1%
AUU171
AUC175
Met M6.5%
AUA199
AUG47
Val V4.8%
GUU39
GUC29
GUA91
GUG24
Ser S7.5%
UCU46
UCC65
UCA105
UCG14
AGU11
AGC43
Pro P5.0%
CCU54
CCC64
CCA63
CCG9
Thr T8.3%
ACU69
ACC88
ACA149
ACG11
Ala A6.5%
GCU65
GCC76
GCA95
GCG10
Tyr Y3.5%
UAU62
UAC72
His H2.6%
CAU31
CAC69
Gln Q2.4%
CAA74
CAG17
Asn N4.0%
AAU54
AAC100
Lys K2.6%
AAA94
AAG6
Asp D1.8%
GAU31
GAC39
Glu E2.6%
GAA84
GAG14
Cys C0.7%
UGU14
UGC13
Trp W2.8%
UGA89
UGG16
Arg R1.7%
CGU8
CGC8
CGA45
CGG2
Gly G5.6%
GGU45
GGC41
GGA97
GGG30
Stop 0.2%
UAA8
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_009126.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
CYTBProtein-coding gene11,1401,140 bp+40.2%
tRNA-ThrTransfer RNA1,1411,21070 bp+–
tRNA-ProTransfer RNA1,2111,27767 bp−–
D-loopControl region1,2782,4391,162 bp–44.3%
tRNA-PheTransfer RNA2,4402,50970 bp+–
12S rRNARibosomal RNA2,5103,472963 bp+40.6%
tRNA-ValTransfer RNA3,4743,54168 bp+–
16S rRNARibosomal RNA3,5425,1261,585 bp+37.9%
tRNA-Leu (UUR)Transfer RNA5,1275,20175 bp+–
ND1Protein-coding gene5,2046,160957 bp+40.8%
tRNA-IleTransfer RNA6,1606,22869 bp+–
tRNA-GlnTransfer RNA6,2256,29874 bp−–
tRNA-MetTransfer RNA6,3006,36869 bp+–
ND2Protein-coding gene6,3697,4101,042 bp+36.7%
tRNA-TrpTransfer RNA7,4117,47868 bp+–
tRNA-AlaTransfer RNA7,4907,55869 bp−–
tRNA-AsnTransfer RNA7,5607,63273 bp−–
tRNA-CysTransfer RNA7,6637,72967 bp−–
tRNA-TyrTransfer RNA7,7307,79667 bp−–
COX1Protein-coding gene7,7989,3421,545 bp+41.0%
tRNA-Ser (UCN)Transfer RNA9,3409,41071 bp−–
tRNA-AspTransfer RNA9,4159,48167 bp+–
COX2Protein-coding gene9,48210,165684 bp+38.6%
tRNA-LysTransfer RNA10,16910,23668 bp+–
ATP8Protein-coding gene10,23810,441204 bp+31.9%
ATP6Protein-coding gene10,39911,079681 bp+39.8%
COX3Protein-coding gene11,07911,862784 bp+43.0%
tRNA-GlyTransfer RNA11,86311,93169 bp+–
ND3Protein-coding gene11,93212,278347 bp+38.3%
tRNA-ArgTransfer RNA12,27812,34467 bp+–
ND4LProtein-coding gene12,34712,643297 bp+38.1%
ND4Protein-coding gene12,63714,0141,378 bp+39.0%
tRNA-HisTransfer RNA14,01514,08369 bp+–
tRNA-Ser (AGY)Transfer RNA14,08414,14259 bp+–
tRNA-Leu (CUN)Transfer RNA14,14314,21270 bp+–
ND5Protein-coding gene14,21316,0331,821 bp+39.3%
ND6Protein-coding gene16,01716,550534 bp−37.3%
tRNA-GluTransfer RNA16,54916,61971 bp−–

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