family · mtDNA statistics

Tupaiidae

4 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

40.9%

mean GC, whole genome

SD 0.5, range 40.3–41.5%

16,471

median genome length, bp

Range 16,186–16,756 bp

genus

Regions

GC content of each region across Tupaiidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	40.91%	0.52	0.013	40.28%Tupaia tana	40.93%	41.50%Tupaia glis	–	–
Protein-coding	4	41.27%	0.68	0.017	40.42%Tupaia tana	41.28%	42.09%Tupaia glis	–	–
All rRNA	4	41.14%	0.43	0.010	40.60%Tupaia tana	41.20%	41.57%Tupaia glis	–	–
All tRNA	4	39.11%	0.67	0.017	38.20%Tupaia tana	39.22%	39.80%Tupaia glis	–	–
12S rRNA	4	42.25%	0.29	0.007	42.01%Tupaia tana	42.16%	42.68%Tupaia minor	–	–
16S rRNA	4	40.48%	0.62	0.015	39.74%Tupaia tana	40.46%	41.25%Tupaia glis	–	–
D-loop	4	39.47%	1.52	0.038	37.26%Tupaia belangeri	39.98%	40.68%Tupaia tana	–	–
ND1	4	40.90%	1.59	0.039	39.50%Tupaia belangeri	40.63%	42.83%Tupaia glis	–	–
ND2	4	38.42%	0.60	0.016	37.84%Tupaia belangeri	38.29%	39.25%Tupaia glis	–	–
COX1	4	43.34%	1.25	0.029	41.83%Tupaia tana	43.32%	44.88%Tupaia glis	–	–
COX2	4	41.41%	0.59	0.014	40.94%Tupaia belangeri	41.23%	42.25%Tupaia glis	–	–
ATP8	4	34.44%	2.21	0.064	31.86%Tupaia tana	34.31%	37.25%Tupaia minor	–	–
ATP6	4	42.25%	1.86	0.044	40.68%Tupaia tana	41.70%	44.93%Tupaia belangeri	–	–
COX3	4	43.36%	0.92	0.021	42.68%Tupaia minor	43.03%	44.71%Tupaia glis	–	–
ND3	4	42.35%	1.16	0.027	41.33%Tupaia glis	42.14%	43.80%Tupaia belangeri	–	–
ND4L	4	41.58%	2.48	0.060	38.72%Tupaia minor	41.41%	44.78%Tupaia glis	–	–
ND4	4	40.00%	0.75	0.019	39.19%Tupaia tana	39.91%	41.00%Tupaia glis	–	–
ND5	4	40.46%	1.02	0.025	39.29%Tupaia tana	40.45%	41.63%Tupaia minor	–	–
ND6	4	39.37%	1.13	0.029	38.12%Tupaia tana	39.46%	40.42%Tupaia belangeri	–	–
CYTB	4	43.47%	0.35	0.008	42.98%Tupaia minor	43.55%	43.81%Tupaia glis	–	–

Genera of Tupaiidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Tupaiidae

Tupaia	4	40.91%	0.52	0.013	40.28%Tupaia tana	40.93%	41.50%Tupaia glis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Tupaiidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Tupaiidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.