MitoAge

Tupaia tana

Large tree shrew

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Maximum lifespan
11.6 yr
AnAge record
mtDNA size
16,186 bp
RefSeq NC_050992.1
GC content
40.28%
Whole genome
Non-coding
845 bp
D-loop 789 bp

Where Large tree shrew sits among 2,335 species

Whole-genome GC content against maximum lifespan. Large tree shrew has the 1,465th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Large tree shrew
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,186 bp
GC skew (G − C) / (G + C)
−0.286
AT skew (A − T) / (A + T)
+0.089

Life history

Maximum lifespan
11.6 years
Adult weight
197.8 g
Female sexual maturity
365 days
Male sexual maturity
365 days
Litter or clutch size
2.2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03204)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,186 bp
Protein-coding11,338 bp
12S rRNA945 bp
16S rRNA1,565 bp
All tRNA1,493 bp
D-loop789 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.8%28.5%13.1%26.6%39.69%−0.340+0.056
ND2NADH dehydrogenase subunit 21,042 bp35.8%26.0%10.2%28.0%38.20%−0.467+0.158
COX1Cytochrome c oxidase subunit I1,542 bp28.3%29.8%16.8%25.0%41.83%−0.197−0.026
COX2Cytochrome c oxidase subunit II684 bp31.3%27.3%14.9%26.5%41.37%−0.279+0.067
ATP8ATP synthase F0 subunit 8204 bp39.2%28.9%7.4%24.5%31.86%−0.538+0.151
ATP6ATP synthase F0 subunit 6681 bp30.5%28.8%12.5%28.2%40.68%−0.386+0.030
COX3Cytochrome c oxidase subunit III785 bp28.4%28.4%15.5%27.6%43.19%−0.2800.000
ND3NADH dehydrogenase subunit 3347 bp30.0%28.5%14.4%27.1%41.50%−0.306+0.025
ND4LNADH dehydrogenase subunit 4L297 bp27.9%30.6%14.1%27.3%41.41%−0.317−0.046
ND4NADH dehydrogenase subunit 41,378 bp32.6%28.2%11.7%27.5%39.19%−0.404+0.072
ND5NADH dehydrogenase subunit 51,812 bp32.6%28.1%11.8%27.5%39.29%−0.402+0.073
ND6NADH dehydrogenase subunit 6522 bp40.2%21.6%8.2%29.9%38.12%−0.568+0.300
CYTBCytochrome b1,140 bp29.8%26.7%13.9%29.6%43.51%−0.359+0.056
12S rRNA12S ribosomal RNA945 bp34.5%23.5%18.7%23.3%42.01%−0.108+0.190
16S rRNA16S ribosomal RNA1,565 bp36.2%24.1%18.4%21.3%39.74%−0.074+0.200
D-loopControl region (D-loop)789 bp30.4%28.9%16.5%24.2%40.68%−0.190+0.026

Codon usage

Counts per codon, darker is more frequent

3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU108
UUC120
Leu L15.7%
UUA123
UUG19
CUU81
CUC70
CUA254
CUG50
Ile I8.9%
AUU165
AUC173
Met M6.4%
AUA188
AUG55
Val V5.1%
GUU39
GUC39
GUA99
GUG17
Ser S7.3%
UCU35
UCC65
UCA106
UCG10
AGU17
AGC44
Pro P5.2%
CCU40
CCC36
CCA115
CCG8
Thr T8.1%
ACU52
ACC81
ACA156
ACG17
Ala A7.0%
GCU58
GCC118
GCA82
GCG6
Tyr Y3.5%
UAU47
UAC85
His H2.5%
CAU33
CAC61
Gln Q2.3%
CAA77
CAG10
Asn N3.9%
AAU57
AAC90
Lys K2.6%
AAA86
AAG13
Asp D1.9%
GAU23
GAC48
Glu E2.4%
GAA69
GAG23
Cys C0.7%
UGU8
UGC17
Trp W2.8%
UGA95
UGG11
Arg R1.7%
CGU8
CGC13
CGA40
CGG5
Gly G5.8%
GGU39
GGC59
GGA96
GGG27
Stop 0.2%
UAA5
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_050992.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16666 bp+–
12S rRNARibosomal RNA671,011945 bp+42.0%
tRNA-ValTransfer RNA1,0121,07968 bp+–
16S rRNARibosomal RNA1,0802,6441,565 bp+39.7%
tRNA-Leu (UUR)Transfer RNA2,6452,71975 bp+–
ND1Protein-coding gene2,7223,676955 bp+39.7%
tRNA-IleTransfer RNA3,6773,74569 bp+–
tRNA-GlnTransfer RNA3,7433,81371 bp−–
tRNA-MetTransfer RNA3,8133,88169 bp+–
ND2Protein-coding gene3,8824,9231,042 bp+38.2%
tRNA-TrpTransfer RNA4,9244,99067 bp+–
tRNA-AlaTransfer RNA4,9955,06470 bp−–
tRNA-AsnTransfer RNA5,0665,13873 bp−–
tRNA-CysTransfer RNA5,1725,23968 bp−–
tRNA-TyrTransfer RNA5,2405,30667 bp−–
COX1Protein-coding gene5,3076,8481,542 bp+41.8%
tRNA-Ser (UCN)Transfer RNA6,8506,91869 bp−–
tRNA-AspTransfer RNA6,9236,99169 bp+–
COX2Protein-coding gene6,9927,675684 bp+41.4%
tRNA-LysTransfer RNA7,6777,74064 bp+–
ATP8Protein-coding gene7,7437,946204 bp+31.9%
ATP6Protein-coding gene7,9048,584681 bp+40.7%
COX3Protein-coding gene8,5849,368785 bp+43.2%
tRNA-GlyTransfer RNA9,3699,43567 bp+–
ND3Protein-coding gene9,4369,782347 bp+41.5%
tRNA-ArgTransfer RNA9,7839,84866 bp+–
ND4LProtein-coding gene9,85010,146297 bp+41.4%
ND4Protein-coding gene10,14011,5171,378 bp+39.2%
tRNA-HisTransfer RNA11,51811,58669 bp+–
tRNA-Ser (AGY)Transfer RNA11,58711,64660 bp+–
tRNA-Leu (CUN)Transfer RNA11,64611,71570 bp+–
ND5Protein-coding gene11,71613,5271,812 bp+39.3%
ND6Protein-coding gene13,53014,051522 bp−38.1%
tRNA-GluTransfer RNA14,05214,11968 bp−–
CYTBProtein-coding gene14,12315,2621,140 bp+43.5%
tRNA-ThrTransfer RNA15,26315,32765 bp+–
tRNA-ProTransfer RNA15,33015,39768 bp−–
D-loopControl region15,39816,186789 bp–40.7%

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