order · mtDNA statistics

Acanthuriformes

7 species in 1 family. Every region of their mitochondrial genomes, side by side.

Group

species

44.4%

mean GC, whole genome

SD 1.1, range 43.1–45.5%

16,504

median genome length, bp

Range 16,480–16,611 bp

family

Regions

GC content of each region across Acanthuriformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	7	44.40%	1.11	0.025	43.08%Acanthurus bahianus	44.71%	45.55%Zebrasoma flavescens	0.19	0.68
Protein-coding	7	44.80%	1.44	0.032	42.98%Acanthurus bahianus	45.20%	46.31%Zebrasoma flavescens	0.23	0.62
All rRNA	7	45.64%	0.25	0.005	45.36%Naso brevirostris	45.74%	45.95%Zebrasoma flavescens	0.74	0.06
All tRNA	7	44.06%	0.58	0.013	43.38%Acanthurus bahianus	44.14%	44.79%Zebrasoma flavescens	0.57	0.18
12S rRNA	7	47.14%	0.50	0.011	46.53%Naso brevirostris	46.95%	47.79%Acanthurus lineatus	0.51	0.24
16S rRNA	7	44.80%	0.27	0.006	44.52%Acanthurus bahianus	44.71%	45.24%Naso hexacanthus	0.52	0.23
D-loop	5	27.42%	15.80	0.576	0.00%Acanthurus bahianus	34.39%	39.51%Naso hexacanthus	0.64	0.24
ND1	7	45.63%	2.25	0.049	42.77%Acanthurus lineatus	46.46%	47.79%Zebrasoma scopas	0.03	0.95
ND2	7	46.80%	1.03	0.022	45.03%Naso brevirostris	46.85%	47.80%Acanthurus lineatus	0.80	0.03
COX1	7	43.56%	2.52	0.058	40.17%Acanthurus tractus	45.26%	45.84%Naso hexacanthus	0.18	0.7
COX2	7	42.38%	1.67	0.039	40.38%Acanthurus bahianus	42.98%	44.14%Zebrasoma flavescens	0.04	0.92
ATP8	7	44.64%	1.68	0.038	42.26%Acanthurus bahianus	45.24%	46.43%Naso hexacanthus	0.43	0.33
ATP6	7	43.97%	2.91	0.066	39.77%Acanthurus bahianus	45.18%	46.41%Zebrasoma scopas	0.35	0.44
COX3	7	45.97%	0.94	0.021	44.84%Acanthurus bahianus	46.11%	46.88%Zebrasoma scopas	−0.10	0.83
ND3	7	46.95%	2.33	0.050	44.80%Acanthurus tractus	46.53%	50.14%Zebrasoma scopas	0.44	0.33
ND4L	7	47.47%	1.88	0.040	46.13%Acanthurus lineatus	46.46%	50.84%Naso hexacanthus	−0.05	0.91
ND4	7	45.06%	1.58	0.035	43.01%Acanthurus bahianus	45.26%	46.92%Zebrasoma flavescens	0.30	0.51
ND5	7	43.61%	1.13	0.026	42.15%Acanthurus tractus	44.15%	44.97%Naso hexacanthus	0.24	0.6
ND6	7	45.13%	3.10	0.069	41.95%Acanthurus lineatus	43.87%	49.62%Zebrasoma scopas	−0.03	0.95
CYTB	7	44.89%	0.59	0.013	44.26%Acanthurus bahianus	44.79%	45.75%Zebrasoma flavescens	−0.09	0.85

Families of Acanthuriformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Acanthuriformes

Acanthuridae	7	44.40%	1.11	0.025	43.08%Acanthurus bahianus	44.71%	45.55%Zebrasoma flavescens	0.19	0.68

Codon usage

Share of each codon in all 13 protein-coding genes, across Acanthuriformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Acanthuriformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.