Acanthurus lineatus
Lined surgeonfish
GC content
43.57%
Whole genome
Non-coding
927 bp
D-loop 852 bp
Where Lined surgeonfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Lined surgeonfish has the 193rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,532 bp
- GC skew (G − C) / (G + C)
- −0.289
- AT skew (A − T) / (A + T)
- +0.058
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,532 bp
Protein-coding11,412 bp
12S rRNA950 bp
16S rRNA1,689 bp
All tRNA1,554 bp
D-loop852 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.77% | −0.396 | 0.000 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.80% | −0.420 | +0.055 | |||||
| COX1Cytochrome c oxidase subunit I | 1,550 bp | 42.65% | −0.189 | −0.075 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.25% | −0.270 | +0.054 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.130 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 44.36% | −0.452 | −0.042 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.22% | −0.285 | −0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 46.53% | −0.441 | −0.124 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.328 | −0.188 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.82% | −0.386 | +0.045 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,848 bp | 42.97% | −0.421 | +0.070 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 41.95% | −0.479 | +0.413 | |||||
| CYTBCytochrome b | 1,141 bp | 44.35% | −0.375 | −0.065 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 47.79% | −0.088 | +0.185 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 44.64% | −0.130 | +0.239 | |||||
| D-loopControl region (D-loop) | 852 bp | 28.76% | −0.069 | −0.002 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU102
UUC139
Leu L16.7%
UUA111
UUG13
CUU123
CUC129
CUA228
CUG33
Ile I7.8%
AUU173
AUC125
Met M4.1%
AUA110
AUG47
Val V5.8%
GUU55
GUC54
GUA93
GUG18
Ser S6.9%
UCU52
UCC74
UCA77
UCG7
AGU10
AGC44
Pro P5.7%
CCU65
CCC61
CCA82
CCG8
Thr T7.5%
ACU56
ACC104
ACA122
ACG5
Ala A9.0%
GCU61
GCC142
GCA129
GCG11
Tyr Y2.9%
UAU45
UAC66
His H3.0%
CAU31
CAC82
Gln Q2.3%
CAA77
CAG10
Asn N3.0%
AAU31
AAC84
Lys K1.9%
AAA67
AAG7
Asp D1.9%
GAU16
GAC58
Glu E2.7%
GAA93
GAG11
Cys C0.7%
UGU7
UGC18
Trp W3.1%
UGA112
UGG5
Arg R2.0%
CGU8
CGC13
CGA49
CGG5
Gly G6.4%
GGU37
GGC75
GGA107
GGG25
Stop 0.1%
UAA5
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_010108.2Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,018 | 950 bp | + | 47.8% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,779 | 1,689 bp | + | 44.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 42.8% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,087 | 1,046 bp | + | 47.8% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,160 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,403 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,473 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,475 | 7,024 | 1,550 bp | + | 42.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 41.3% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,121 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,112 | 8,794 | 683 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 45.2% |
| tRNA-Gly | Transfer RNA | 9,580 | 9,651 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,653 | 9,998 | 346 bp | + | 46.5% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,068 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 44.8% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,958 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,806 | 1,848 bp | + | 43.0% |
| ND6 | Protein-coding gene | 13,803 | 14,324 | 522 bp | − | 42.0% |
| tRNA-Glu | Transfer RNA | 14,325 | 14,393 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,399 | 15,539 | 1,141 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,540 | 15,611 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,611 | 15,680 | 70 bp | − | – |
| D-loop | Control region | 15,681 | 16,532 | 852 bp | – | 28.8% |