order · mtDNA statistics

Acropomatiformes

3 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

46.9%

mean GC, whole genome

SD 0.4, range 46.5–47.3%

16,511

median genome length, bp

Range 16,503–16,515 bp

families

Regions

GC content of each region across Acropomatiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	46.87%	0.41	0.009	46.53%Polyprion americanus	46.76%	47.33%Pseudopentaceros richardsoni	–	–
Protein-coding	3	47.59%	0.52	0.011	47.19%Polyprion americanus	47.41%	48.17%Pseudopentaceros richardsoni	–	–
All rRNA	3	47.27%	0.27	0.006	47.01%Pentaceros wheeleri	47.26%	47.54%Pseudopentaceros richardsoni	–	–
All tRNA	3	45.31%	0.28	0.006	45.07%Pentaceros wheeleri	45.24%	45.61%Polyprion americanus	–	–
12S rRNA	3	48.93%	0.39	0.008	48.63%Pentaceros wheeleri	48.79%	49.37%Pseudopentaceros richardsoni	–	–
16S rRNA	3	46.34%	0.21	0.005	46.10%Pentaceros wheeleri	46.40%	46.51%Pseudopentaceros richardsoni	–	–
D-loop	2	70.14%	42.23	0.602	40.28%Pentaceros wheeleri	70.14%	100.00%Polyprion americanus	–	–
ND1	3	47.32%	1.49	0.032	45.64%Pentaceros wheeleri	47.79%	48.51%Pseudopentaceros richardsoni	–	–
ND2	3	50.53%	0.68	0.013	49.76%Polyprion americanus	50.76%	51.05%Pseudopentaceros richardsoni	–	–
COX1	3	46.29%	0.32	0.007	45.97%Pseudopentaceros richardsoni	46.29%	46.62%Polyprion americanus	–	–
COX2	3	43.75%	0.51	0.012	43.27%Pentaceros wheeleri	43.70%	44.28%Pseudopentaceros richardsoni	–	–
ATP8	3	45.63%	2.25	0.049	44.05%Pentaceros wheeleri	44.64%	48.21%Polyprion americanus	–	–
ATP6	3	46.02%	0.75	0.016	45.16%Pentaceros wheeleri	46.41%	46.49%Polyprion americanus	–	–
COX3	3	48.54%	0.56	0.011	47.90%Pentaceros wheeleri	48.79%	48.92%Polyprion americanus	–	–
ND3	3	49.09%	1.35	0.028	47.56%Pentaceros wheeleri	49.57%	50.14%Pseudopentaceros richardsoni	–	–
ND4L	3	49.05%	0.85	0.017	48.15%Polyprion americanus	49.16%	49.83%Pentaceros wheeleri	–	–
ND4	3	48.50%	0.75	0.016	47.65%Polyprion americanus	48.81%	49.06%Pentaceros wheeleri	–	–
ND5	3	47.46%	1.10	0.023	46.28%Polyprion americanus	47.66%	48.45%Pseudopentaceros richardsoni	–	–
ND6	3	47.45%	2.03	0.043	45.59%Polyprion americanus	47.13%	49.62%Pseudopentaceros richardsoni	–	–
CYTB	3	47.57%	1.03	0.022	46.45%Polyprion americanus	47.81%	48.47%Pseudopentaceros richardsoni	–	–

Families of Acropomatiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Acropomatiformes

Pentacerotidae	2	47.05%	0.40	0.009	46.76%Pentaceros wheeleri	47.05%	47.33%Pseudopentaceros richardsoni	–	–
Polyprionidae	1	46.53%	–	–	46.53%Polyprion americanus	46.53%	46.53%Polyprion americanus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Acropomatiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Acropomatiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.