Pseudopentaceros richardsoni
Pelagic armourhead
GC content
47.33%
Whole genome
Non-coding
910 bp
Including the D-loop
Where Pelagic armourhead sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pelagic armourhead has the 95th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,511 bp
- GC skew (G − C) / (G + C)
- −0.272
- AT skew (A − T) / (A + T)
- +0.030
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,511 bp
Protein-coding11,407 bp
12S rRNA948 bp
16S rRNA1,692 bp
All tRNA1,554 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.51% | −0.315 | −0.044 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 51.05% | −0.468 | +0.008 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.97% | −0.217 | −0.093 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.28% | −0.261 | −0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.467 | +0.097 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 46.41% | −0.363 | −0.104 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.79% | −0.269 | −0.060 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.14% | −0.337 | −0.253 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.356 | −0.166 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.81% | −0.338 | −0.010 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.45% | −0.374 | +0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.62% | −0.405 | +0.414 | |||||
| CYTBCytochrome b | 1,141 bp | 48.47% | −0.342 | −0.075 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 49.37% | −0.094 | +0.208 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 46.51% | −0.113 | +0.222 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU111
UUC120
Leu L17.4%
UUA81
UUG26
CUU145
CUC170
CUA184
CUG58
Ile I6.8%
AUU150
AUC110
Met M4.0%
AUA81
AUG70
Val V5.8%
GUU68
GUC60
GUA53
GUG39
Ser S6.4%
UCU35
UCC79
UCA64
UCG12
AGU13
AGC41
Pro P5.8%
CCU50
CCC121
CCA41
CCG10
Thr T8.1%
ACU44
ACC146
ACA102
ACG16
Ala A9.1%
GCU48
GCC176
GCA103
GCG19
Tyr Y2.9%
UAU41
UAC70
His H2.8%
CAU29
CAC77
Gln Q2.7%
CAA71
CAG32
Asn N3.1%
AAU37
AAC81
Lys K1.9%
AAA56
AAG18
Asp D2.0%
GAU18
GAC59
Glu E2.6%
GAA71
GAG29
Cys C0.6%
UGU5
UGC18
Trp W3.2%
UGA102
UGG19
Arg R2.0%
CGU9
CGC11
CGA31
CGG24
Gly G6.5%
GGU27
GGC103
GGA68
GGG48
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_020016.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 49.4% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,780 | 1,692 bp | + | 46.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 48.5% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,904 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,042 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 51.1% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,403 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,473 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,475 | 7,025 | 1,551 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,026 | 7,096 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,172 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,180 | 7,870 | 691 bp | + | 44.3% |
| tRNA-Lys | Transfer RNA | 7,871 | 7,944 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,104 | 8,786 | 683 bp | + | 46.4% |
| COX3 | Protein-coding gene | 8,787 | 9,571 | 785 bp | + | 48.8% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,643 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,644 | 9,992 | 349 bp | + | 50.1% |
| tRNA-Arg | Transfer RNA | 9,993 | 10,061 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,062 | 10,358 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,352 | 11,732 | 1,381 bp | + | 48.8% |
| tRNA-His | Transfer RNA | 11,733 | 11,801 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,802 | 11,872 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,875 | 11,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,948 | 13,786 | 1,839 bp | + | 48.5% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 49.6% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 48.5% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,590 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,590 | 15,659 | 70 bp | − | – |