order · mtDNA statistics

Orectolobiformes

3 species in 3 families. Every region of their mitochondrial genomes, side by side.

Group

species

37.2%

mean GC, whole genome

SD 0.2, range 37.0–37.4%

16,726

median genome length, bp

Range 16,692–16,875 bp

families

Regions

GC content of each region across Orectolobiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	37.18%	0.25	0.007	36.95%Ginglymostoma cirratum	37.14%	37.44%Chiloscyllium plagiosum	–	–
Protein-coding	3	37.58%	0.44	0.012	37.09%Ginglymostoma cirratum	37.70%	37.94%Chiloscyllium plagiosum	–	–
All rRNA	3	37.55%	0.20	0.005	37.32%Rhincodon typus	37.67%	37.67%Chiloscyllium plagiosum	–	–
All tRNA	3	37.99%	0.40	0.011	37.60%Chiloscyllium plagiosum	37.97%	38.40%Rhincodon typus	–	–
12S rRNA	3	40.17%	0.16	0.004	40.06%Ginglymostoma cirratum	40.10%	40.36%Chiloscyllium plagiosum	–	–
16S rRNA	3	36.06%	0.29	0.008	35.74%Rhincodon typus	36.14%	36.30%Ginglymostoma cirratum	–	–
D-loop	3	31.08%	1.01	0.033	30.04%Rhincodon typus	31.14%	32.06%Ginglymostoma cirratum	–	–
ND1	3	39.04%	1.34	0.034	37.64%Chiloscyllium plagiosum	39.18%	40.31%Rhincodon typus	–	–
ND2	3	38.11%	0.34	0.009	37.76%Ginglymostoma cirratum	38.15%	38.43%Rhincodon typus	–	–
COX1	3	37.53%	0.50	0.013	37.12%Ginglymostoma cirratum	37.38%	38.09%Chiloscyllium plagiosum	–	–
COX2	3	37.39%	1.21	0.032	36.61%Ginglymostoma cirratum	36.76%	38.78%Chiloscyllium plagiosum	–	–
ATP8	3	32.14%	1.03	0.032	30.95%Rhincodon typus	32.74%	32.74%Chiloscyllium plagiosum	–	–
ATP6	3	36.74%	0.86	0.023	36.11%Rhincodon typus	36.40%	37.72%Chiloscyllium plagiosum	–	–
COX3	3	39.82%	1.34	0.034	38.42%Rhincodon typus	39.95%	41.09%Chiloscyllium plagiosum	–	–
ND3	3	39.26%	2.01	0.051	37.82%Ginglymostoma cirratum	38.40%	41.55%Chiloscyllium plagiosum	–	–
ND4L	3	36.48%	0.19	0.005	36.36%Chiloscyllium plagiosum	36.36%	36.70%Rhincodon typus	–	–
ND4	3	36.40%	1.38	0.038	34.97%Ginglymostoma cirratum	36.50%	37.74%Rhincodon typus	–	–
ND5	3	36.36%	0.35	0.010	36.11%Chiloscyllium plagiosum	36.21%	36.76%Rhincodon typus	–	–
ND6	3	36.76%	1.01	0.027	36.00%Ginglymostoma cirratum	36.38%	37.90%Chiloscyllium plagiosum	–	–
CYTB	3	38.78%	0.87	0.023	37.90%Ginglymostoma cirratum	38.78%	39.65%Chiloscyllium plagiosum	–	–

Families of Orectolobiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Orectolobiformes

Hemiscylliidae	1	37.44%	–	–	37.44%Chiloscyllium plagiosum	37.44%	37.44%Chiloscyllium plagiosum	–	–
Rhincodontidae	1	37.14%	–	–	37.14%Rhincodon typus	37.14%	37.14%Rhincodon typus	–	–
Ginglymostomatidae	1	36.95%	–	–	36.95%Ginglymostoma cirratum	36.95%	36.95%Ginglymostoma cirratum	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Orectolobiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Orectolobiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.