Chiloscyllium plagiosum
Whitespotted bambooshark
GC content
37.45%
Whole genome
Non-coding
1,145 bp
D-loop 1,095 bp
Where Whitespotted bambooshark sits among 2,335 species
Whole-genome GC content against maximum lifespan. Whitespotted bambooshark has the 633rd longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,726 bp
- GC skew (G − C) / (G + C)
- −0.314
- AT skew (A − T) / (A + T)
- +0.060
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,726 bp
Protein-coding11,404 bp
12S rRNA954 bp
16S rRNA1,677 bp
All tRNA1,548 bp
D-loop1,095 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 37.64% | −0.428 | +0.039 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 38.15% | −0.509 | +0.079 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 38.09% | −0.174 | −0.071 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.78% | −0.246 | +0.035 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 32.74% | −0.455 | +0.133 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.72% | −0.434 | +0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 41.09% | −0.269 | −0.011 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.55% | −0.366 | −0.078 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 36.36% | −0.370 | −0.048 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 36.50% | −0.412 | +0.031 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 36.11% | −0.476 | +0.045 | |||||
| ND6NADH dehydrogenase subunit 6 | 525 bp | 37.91% | −0.588 | +0.374 | |||||
| CYTBCytochrome b | 1,145 bp | 39.65% | −0.432 | −0.022 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 40.36% | −0.101 | +0.188 | |||||
| 16S rRNA16S ribosomal RNA | 1,677 bp | 36.14% | −0.099 | +0.190 | |||||
| D-loopControl region (D-loop) | 1,095 bp | 31.14% | −0.290 | +0.061 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU113
UUC120
Leu L16.8%
UUA205
UUG16
CUU96
CUC103
CUA207
CUG13
Ile I9.6%
AUU206
AUC159
Met M5.2%
AUA162
AUG37
Val V4.1%
GUU44
GUC24
GUA78
GUG12
Ser S7.1%
UCU44
UCC64
UCA104
UCG2
AGU19
AGC37
Pro P5.6%
CCU45
CCC52
CCA113
CCG3
Thr T7.5%
ACU53
ACC89
ACA139
ACG4
Ala A7.2%
GCU82
GCC92
GCA100
GCG2
Tyr Y3.3%
UAU80
UAC45
His H2.6%
CAU51
CAC47
Gln Q2.6%
CAA97
CAG3
Asn N3.8%
AAU73
AAC73
Lys K2.3%
AAA85
AAG3
Asp D1.9%
GAU44
GAC28
Glu E2.5%
GAA87
GAG10
Cys C0.6%
UGU11
UGC13
Trp W3.2%
UGA114
UGG7
Arg R1.9%
CGU13
CGC13
CGA45
CGG2
Gly G5.8%
GGU56
GGC42
GGA109
GGG13
Stop 0.2%
UAA8
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_012570.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (37.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,022 | 954 bp | + | 40.4% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,771 | 1,677 bp | + | 36.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,772 | 2,846 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,847 | 3,821 | 975 bp | + | 37.6% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,893 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,894 | 3,965 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,966 | 4,034 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,035 | 5,080 | 1,046 bp | + | 38.2% |
| tRNA-Trp | Transfer RNA | 5,081 | 5,150 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,152 | 5,220 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,221 | 5,293 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,327 | 5,392 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,393 | 5,462 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,464 | 7,020 | 1,557 bp | + | 38.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,167 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,170 | 7,860 | 691 bp | + | 38.8% |
| tRNA-Lys | Transfer RNA | 7,861 | 7,934 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,936 | 8,103 | 168 bp | + | 32.7% |
| ATP6 | Protein-coding gene | 8,094 | 8,777 | 684 bp | + | 37.7% |
| COX3 | Protein-coding gene | 8,777 | 9,562 | 786 bp | + | 41.1% |
| tRNA-Gly | Transfer RNA | 9,565 | 9,634 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,635 | 9,983 | 349 bp | + | 41.6% |
| tRNA-Arg | Transfer RNA | 9,984 | 10,052 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,053 | 10,349 | 297 bp | + | 36.4% |
| ND4 | Protein-coding gene | 10,343 | 11,720 | 1,378 bp | + | 36.5% |
| tRNA-His | Transfer RNA | 11,721 | 11,789 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,790 | 11,856 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,857 | 11,928 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,929 | 13,767 | 1,839 bp | + | 36.1% |
| ND6 | Protein-coding gene | 13,750 | 14,274 | 525 bp | − | 37.9% |
| tRNA-Glu | Transfer RNA | 14,275 | 14,344 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,347 | 15,491 | 1,145 bp | + | 39.7% |
| tRNA-Thr | Transfer RNA | 15,492 | 15,562 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,563 | 15,631 | 69 bp | − | – |
| D-loop | Control region | 15,632 | 16,726 | 1,095 bp | – | 31.1% |