family · mtDNA statistics
Accipitridae
14 species in 10 genera. Every region of their mitochondrial genomes, side by side.
14
species
45.2%
mean GC, whole genome
SD 1.0, range 43.0–46.7%
18,358
median genome length, bp
Range 17,332–19,059 bp
10
genera
Regions
GC content of each region across Accipitridae, % of A + C + G + T| Region | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Whole genome | 14 | 45.20% | 0.98 | 43.04%Accipiter nisus | 45.43% | 46.67%Aquila chrysaetos | 0.64 | 0.01 | |
| Protein-coding | 14 | 47.09% | 0.75 | 45.03%Accipiter nisus | 47.30% | 47.80%Milvus migrans | 0.35 | 0.22 | |
| All rRNA | 14 | 46.75% | 0.86 | 45.17%Astur gentilis | 46.99% | 47.99%Aquila heliaca | 0.65 | 0.01 | |
| All tRNA | 14 | 42.98% | 0.35 | 42.43%Accipiter nisus | 43.02% | 43.53%Haliastur indus | −0.15 | 0.6 | |
| 12S rRNA | 14 | 49.17% | 1.13 | 47.68%Astur gentilis | 48.72% | 51.03%Aquila heliaca | 0.63 | 0.02 | |
| 16S rRNA | 14 | 45.27% | 0.81 | 43.64%Astur gentilis | 45.45% | 46.49%Aquila fasciata | 0.57 | 0.03 | |
| D-loop | 13 | 38.91% | 3.01 | 33.55%Accipiter nisus | 38.58% | 43.91%Gyps fulvus | 0.39 | 0.19 | |
| ND1 | 14 | 47.16% | 1.32 | 44.00%Accipiter nisus | 47.49% | 48.30%Aquila chrysaetos | 0.28 | 0.34 | |
| ND2 | 14 | 46.36% | 1.20 | 44.00%Accipiter nisus | 46.25% | 48.80%Haliastur indus | 0.17 | 0.56 | |
| COX1 | 14 | 47.49% | 1.09 | 44.62%Accipiter nisus | 47.49% | 48.94%Aquila chrysaetos | 0.47 | 0.09 | |
| COX2 | 14 | 46.15% | 1.00 | 44.44%Butastur indicus | 46.42% | 47.22%Aegypius monachus | 0.78 | 9.0 × 10⁻⁴ | |
| ATP8 | 14 | 44.64% | 2.10 | 41.67%Aquila nipalensis | 44.05% | 48.81%Aegypius monachus | −0.02 | 0.95 | |
| ATP6 | 14 | 45.75% | 0.76 | 44.74%Accipiter nisus | 45.98% | 46.93%Aegypius monachus | 0.37 | 0.2 | |
| COX3 | 14 | 48.52% | 1.09 | 46.56%Accipiter nisus | 48.66% | 50.38%Milvus migrans | −0.22 | 0.44 | |
| ND3 | 14 | 45.57% | 1.59 | 41.60%Astur gentilis | 45.87% | 47.58%Aquila nipalensis | 0.54 | 0.05 | |
| ND4L | 14 | 47.91% | 1.75 | 45.45%Astur gentilis | 47.81% | 51.52%Butastur indicus | −0.28 | 0.33 | |
| ND4 | 14 | 47.29% | 1.24 | 43.76%Accipiter nisus | 47.57% | 48.58%Aegypius monachus | 0.36 | 0.2 | |
| ND5 | 14 | 46.30% | 0.80 | 44.85%Gyps fulvus | 46.59% | 47.41%Haliaeetus albicilla | −0.19 | 0.51 | |
| ND6 | 14 | 49.59% | 1.02 | 47.59%Accipiter nisus | 49.52% | 51.25%Aquila nipalensis | 0.32 | 0.26 | |
| CYTB | 14 | 47.65% | 0.94 | 45.89%Accipiter nisus | 47.77% | 49.26%Milvus migrans | 0.38 | 0.18 |
Genera of Accipitridae
GC content of the whole genome, % of A + C + G + T| Aquila | 4 | 46.10% | 0.39 | 45.80%Aquila fasciata | 45.96% | 46.67%Aquila chrysaetos | – | – | |
| Buteo | 2 | 44.95% | 0.14 | 44.85%Buteo buteo | 44.95% | 45.05%Buteo lagopus | – | – | |
| Astur | 1 | 44.11% | – | 44.11%Astur gentilis | 44.11% | 44.11%Astur gentilis | – | – | |
| Accipiter | 1 | 43.04% | – | 43.04%Accipiter nisus | 43.04% | 43.04%Accipiter nisus | – | – | |
| Aegypius | 1 | 45.97% | – | 45.97%Aegypius monachus | 45.97% | 45.97%Aegypius monachus | – | – | |
| Haliaeetus | 1 | 45.71% | – | 45.71%Haliaeetus albicilla | 45.71% | 45.71%Haliaeetus albicilla | – | – | |
| Haliastur | 1 | 44.45% | – | 44.45%Haliastur indus | 44.45% | 44.45%Haliastur indus | – | – | |
| Gyps | 1 | 45.16% | – | 45.16%Gyps fulvus | 45.16% | 45.16%Gyps fulvus | – | – | |
| Milvus | 1 | 45.89% | – | 45.89%Milvus migrans | 45.89% | 45.89%Milvus migrans | – | – | |
| Butastur | 1 | 44.20% | – | 44.20%Butastur indicus | 44.20% | 44.20%Butastur indicus | – | – |
Codon usage
Share of each codon in all 13 protein-coding genes, across AccipitridaeLoading codon usage…
Every species, region by region
Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.
The charts
- Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
- Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
- Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
- Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.
What the numbers are
- Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
- Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
- Min and Max name the species with the extreme value.
Lifespan columns
r is the Pearson correlation of the parameter with log10 maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.
The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.