family · mtDNA statistics

Chaetodontidae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

45.1%

mean GC, whole genome

SD 2.1, range 43.0–47.1%

16,600

median genome length, bp

Range 16,538–16,739 bp

genera

Regions

GC content of each region across Chaetodontidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	45.15%	2.07	0.046	43.02%Chelmon rostratus	45.28%	47.15%Chaetodon melannotus	–	–
Protein-coding	3	45.74%	2.87	0.063	42.91%Chelmon rostratus	45.67%	48.64%Chaetodon melannotus	–	–
All rRNA	3	45.76%	0.47	0.010	45.23%Chelmon rostratus	45.90%	46.14%Chaetodon melannotus	–	–
All tRNA	3	44.13%	0.55	0.012	43.57%Chelmon rostratus	44.17%	44.66%Forcipiger flavissimus	–	–
12S rRNA	3	47.86%	0.71	0.015	47.15%Chaetodon melannotus	47.85%	48.58%Chelmon rostratus	–	–
16S rRNA	3	44.58%	1.12	0.025	43.36%Chelmon rostratus	44.81%	45.57%Chaetodon melannotus	–	–
D-loop	2	38.50%	0.91	0.024	37.86%Chelmon rostratus	38.50%	39.15%Forcipiger flavissimus	–	–
ND1	3	46.65%	3.37	0.072	42.97%Chelmon rostratus	47.38%	49.59%Chaetodon melannotus	–	–
ND2	3	47.80%	2.53	0.053	45.32%Chelmon rostratus	47.71%	50.38%Chaetodon melannotus	–	–
COX1	3	46.28%	2.46	0.053	43.82%Chelmon rostratus	46.28%	48.74%Chaetodon melannotus	–	–
COX2	3	42.98%	3.32	0.077	40.09%Chelmon rostratus	42.26%	46.60%Chaetodon melannotus	–	–
ATP8	3	43.25%	3.87	0.090	39.29%Chelmon rostratus	43.45%	47.02%Chaetodon melannotus	–	–
ATP6	3	43.69%	3.87	0.089	39.33%Chelmon rostratus	45.03%	46.71%Chaetodon melannotus	–	–
COX3	3	46.71%	2.62	0.056	44.71%Chelmon rostratus	45.73%	49.68%Chaetodon melannotus	–	–
ND3	3	46.13%	3.85	0.084	41.83%Chelmon rostratus	47.28%	49.28%Chaetodon melannotus	–	–
ND4L	3	49.27%	2.74	0.056	46.13%Chelmon rostratus	50.51%	51.18%Chaetodon melannotus	–	–
ND4	3	46.13%	2.61	0.057	43.69%Chelmon rostratus	45.84%	48.88%Chaetodon melannotus	–	–
ND5	3	44.18%	3.26	0.074	41.65%Chelmon rostratus	43.02%	47.86%Chaetodon melannotus	–	–
ND6	3	45.18%	2.49	0.055	42.34%Chelmon rostratus	46.24%	46.97%Forcipiger flavissimus	–	–
CYTB	3	45.78%	3.08	0.067	42.86%Chelmon rostratus	45.49%	48.99%Chaetodon melannotus	–	–

Genera of Chaetodontidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Chaetodontidae

Chelmon	1	43.02%	–	–	43.02%Chelmon rostratus	43.02%	43.02%Chelmon rostratus	–	–
Chaetodon	1	47.15%	–	–	47.15%Chaetodon melannotus	47.15%	47.15%Chaetodon melannotus	–	–
Forcipiger	1	45.28%	–	–	45.28%Forcipiger flavissimus	45.28%	45.28%Forcipiger flavissimus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Chaetodontidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Chaetodontidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.