Chelmon rostratus
Longnosed butterflyfish
GC content
43.02%
Whole genome
Non-coding
950 bp
D-loop 832 bp
Where Longnosed butterflyfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Longnosed butterflyfish has the 1,558th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,538 bp
- GC skew (G − C) / (G + C)
- −0.246
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,538 bp
Protein-coding11,399 bp
12S rRNA949 bp
16S rRNA1,693 bp
All tRNA1,547 bp
D-loop832 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.97% | −0.337 | −0.040 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 45.32% | −0.435 | 0.000 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 43.82% | −0.188 | −0.136 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.09% | −0.227 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.29% | −0.424 | +0.118 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.33% | −0.353 | −0.113 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.71% | −0.242 | −0.074 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.83% | −0.288 | −0.232 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.328 | −0.113 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 43.69% | −0.382 | −0.026 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.65% | −0.352 | −0.003 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.34% | −0.367 | +0.375 | |||||
| CYTBCytochrome b | 1,141 bp | 42.86% | −0.309 | −0.098 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.58% | −0.059 | +0.176 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 43.36% | −0.057 | +0.189 | |||||
| D-loopControl region (D-loop) | 832 bp | 37.86% | −0.124 | +0.087 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU111
UUC129
Leu L17.1%
UUA140
UUG17
CUU158
CUC116
CUA166
CUG53
Ile I7.6%
AUU217
AUC73
Met M4.4%
AUA108
AUG61
Val V5.5%
GUU71
GUC36
GUA84
GUG20
Ser S6.7%
UCU59
UCC63
UCA66
UCG7
AGU16
AGC43
Pro P5.7%
CCU76
CCC78
CCA54
CCG8
Thr T8.0%
ACU70
ACC116
ACA110
ACG7
Ala A8.6%
GCU67
GCC136
GCA112
GCG12
Tyr Y2.8%
UAU55
UAC51
His H2.8%
CAU35
CAC70
Gln Q2.7%
CAA94
CAG9
Asn N3.2%
AAU64
AAC58
Lys K2.1%
AAA70
AAG9
Asp D1.9%
GAU26
GAC47
Glu E2.6%
GAA78
GAG22
Cys C0.6%
UGU8
UGC16
Trp W3.1%
UGA103
UGG15
Arg R2.0%
CGU17
CGC6
CGA43
CGG9
Gly G6.1%
GGU34
GGC77
GGA75
GGG46
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_025953.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,018 | 949 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,019 | 1,088 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,781 | 1,693 bp | + | 43.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,854 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 43.0% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,087 | 1,046 bp | + | 45.3% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,161 | 74 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,305 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,475 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,477 | 7,021 | 1,545 bp | + | 43.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,027 | 7,097 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,169 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 40.1% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,942 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 39.3% |
| ATP6 | Protein-coding gene | 8,102 | 8,785 | 684 bp | + | 39.3% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 44.7% |
| tRNA-Gly | Transfer RNA | 9,580 | 9,649 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 41.8% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,068 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,359 | 11,736 | 1,378 bp | + | 43.7% |
| tRNA-His | Transfer RNA | 11,737 | 11,807 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,882 | 11,954 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,793 | 1,839 bp | + | 41.7% |
| ND6 | Protein-coding gene | 13,790 | 14,311 | 522 bp | − | 42.3% |
| tRNA-Glu | Transfer RNA | 14,312 | 14,380 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 42.9% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,596 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,665 | 70 bp | − | – |
| D-loop | Control region | 15,666 | 16,497 | 832 bp | – | 37.9% |