family · mtDNA statistics

Dasyuridae

6 species in 6 genera. Every region of their mitochondrial genomes, side by side.

Group

species

37.7%

mean GC, whole genome

SD 1.1, range 36.3–39.4%

17,261

median genome length, bp

Range 17,085–17,405 bp

genera

Regions

GC content of each region across Dasyuridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	37.68%	1.15	0.031	36.29%Dasyurus hallucatus	37.27%	39.39%Phascogale tapoatafa	−0.13	0.81
Protein-coding	6	38.38%	1.42	0.037	36.55%Dasyurus hallucatus	37.99%	40.56%Phascogale tapoatafa	−0.08	0.88
All rRNA	6	39.14%	0.64	0.016	38.50%Antechinus flavipes	38.99%	40.16%Phascogale tapoatafa	−0.16	0.76
All tRNA	6	36.07%	0.73	0.020	34.80%Sminthopsis crassicaudata	36.39%	36.66%Antechinus flavipes	−0.21	0.69
12S rRNA	6	41.56%	0.64	0.015	40.59%Sarcophilus harrisii	41.52%	42.60%Phascogale tapoatafa	−0.52	0.29
16S rRNA	6	37.68%	0.74	0.020	36.72%Antechinus flavipes	37.55%	38.68%Phascogale tapoatafa	0.05	0.92
D-loop	4	33.62%	2.33	0.069	30.23%Dasyurus hallucatus	34.38%	35.49%Sminthopsis crassicaudata	–	–
ND1	6	38.38%	1.37	0.036	37.10%Dasyurus hallucatus	37.92%	40.65%Phascogale tapoatafa	−0.20	0.7
ND2	6	37.47%	1.46	0.039	35.63%Antechinus flavipes	37.55%	39.27%Phascogale tapoatafa	0.50	0.31
COX1	6	38.89%	1.49	0.038	36.77%Antechinus flavipes	38.91%	41.12%Phascogale tapoatafa	0.37	0.47
COX2	6	38.47%	1.24	0.032	36.51%Sarcophilus harrisii	38.43%	40.32%Phascogale tapoatafa	−0.49	0.33
ATP8	6	36.93%	1.66	0.045	34.93%Sarcophilus harrisii	36.67%	39.52%Sminthopsis crassicaudata	−0.48	0.33
ATP6	6	37.42%	1.84	0.049	34.80%Dasyurus hallucatus	37.08%	39.79%Sminthopsis crassicaudata	−0.33	0.53
COX3	6	41.33%	2.02	0.049	38.39%Dasyurus hallucatus	41.07%	43.75%Phascogale tapoatafa	−0.01	0.98
ND3	6	39.56%	1.63	0.041	37.86%Dasycercus cristicauda	39.19%	41.60%Phascogale tapoatafa	−0.62	0.19
ND4L	6	37.15%	2.97	0.080	33.67%Sarcophilus harrisii	36.87%	40.40%Phascogale tapoatafa	−0.77	0.07
ND4	6	38.31%	1.88	0.049	34.98%Dasyurus hallucatus	38.46%	40.35%Phascogale tapoatafa	−0.11	0.84
ND5	6	36.41%	1.48	0.041	34.49%Dasyurus hallucatus	36.12%	38.24%Phascogale tapoatafa	−0.05	0.93
ND6	6	35.23%	1.78	0.050	32.93%Dasyurus hallucatus	34.73%	37.72%Phascogale tapoatafa	0.41	0.43
CYTB	6	41.62%	1.90	0.046	39.44%Dasyurus hallucatus	41.14%	44.94%Phascogale tapoatafa	−0.23	0.66

Genera of Dasyuridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Dasyuridae

Dasyurus	1	36.29%	–	–	36.29%Dasyurus hallucatus	36.29%	36.29%Dasyurus hallucatus	–	–
Phascogale	1	39.39%	–	–	39.39%Phascogale tapoatafa	39.39%	39.39%Phascogale tapoatafa	–	–
Sarcophilus	1	37.37%	–	–	37.37%Sarcophilus harrisii	37.37%	37.37%Sarcophilus harrisii	–	–
Sminthopsis	1	38.72%	–	–	38.72%Sminthopsis crassicaudata	38.72%	38.72%Sminthopsis crassicaudata	–	–
Dasycercus	1	37.17%	–	–	37.17%Dasycercus cristicauda	37.17%	37.17%Dasycercus cristicauda	–	–
Antechinus	1	37.13%	–	–	37.13%Antechinus flavipes	37.13%	37.13%Antechinus flavipes	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Dasyuridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Dasyuridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.