family · mtDNA statistics

Lacertidae

3 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

38.5%

mean GC, whole genome

SD 1.7, range 36.8–40.2%

17,156

median genome length, bp

Range 17,046–17,311 bp

genera

Regions

GC content of each region across Lacertidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	38.51%	1.73	0.045	36.76%Zootoca vivipara	38.55%	40.23%Lacerta viridis	–	–
Protein-coding	3	38.27%	2.12	0.055	36.41%Zootoca vivipara	37.83%	40.58%Lacerta viridis	–	–
All rRNA	3	40.84%	1.34	0.033	39.50%Zootoca vivipara	40.83%	42.18%Lacerta viridis	–	–
All tRNA	3	40.75%	0.53	0.013	40.19%Zootoca vivipara	40.83%	41.24%Lacerta viridis	–	–
12S rRNA	3	41.60%	0.55	0.013	41.13%Zootoca vivipara	41.47%	42.21%Lacerta viridis	–	–
16S rRNA	3	40.36%	1.85	0.046	38.47%Zootoca vivipara	40.44%	42.17%Lacerta viridis	–	–
D-loop	3	34.72%	3.31	0.095	31.89%Zootoca vivipara	33.90%	38.35%Podarcis muralis	–	–
ND1	3	37.46%	2.01	0.054	35.50%Zootoca vivipara	37.36%	39.53%Lacerta viridis	–	–
ND2	3	36.47%	2.24	0.061	34.56%Zootoca vivipara	35.92%	38.94%Lacerta viridis	–	–
COX1	3	39.74%	2.09	0.053	38.31%Zootoca vivipara	38.77%	42.14%Lacerta viridis	–	–
COX2	3	37.90%	1.70	0.045	36.79%Zootoca vivipara	37.06%	39.85%Lacerta viridis	–	–
ATP8	3	33.09%	1.82	0.055	31.48%Podarcis muralis	32.72%	35.06%Lacerta viridis	–	–
ATP6	3	36.76%	2.55	0.069	34.80%Zootoca vivipara	35.83%	39.65%Lacerta viridis	–	–
COX3	3	40.69%	2.00	0.049	38.39%Zootoca vivipara	41.58%	42.09%Lacerta viridis	–	–
ND3	3	39.27%	2.03	0.052	38.04%Podarcis muralis	38.15%	41.62%Lacerta viridis	–	–
ND4L	3	36.80%	1.35	0.037	35.35%Zootoca vivipara	37.04%	38.01%Lacerta viridis	–	–
ND4	3	37.65%	2.82	0.075	35.26%Zootoca vivipara	36.93%	40.77%Lacerta viridis	–	–
ND5	3	39.03%	2.01	0.052	37.27%Zootoca vivipara	38.60%	41.23%Lacerta viridis	–	–
ND6	3	37.27%	2.56	0.069	34.49%Zootoca vivipara	37.79%	39.53%Lacerta viridis	–	–
CYTB	3	38.67%	2.23	0.058	36.48%Zootoca vivipara	38.58%	40.94%Lacerta viridis	–	–

Genera of Lacertidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Lacertidae

Lacerta	1	40.23%	–	–	40.23%Lacerta viridis	40.23%	40.23%Lacerta viridis	–	–
Podarcis	1	38.55%	–	–	38.55%Podarcis muralis	38.55%	38.55%Podarcis muralis	–	–
Zootoca	1	36.76%	–	–	36.76%Zootoca vivipara	36.76%	36.76%Zootoca vivipara	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Lacertidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Lacertidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.