Podarcis muralis

Common wall lizard

Maximum lifespan

10 yr

AnAge record

mtDNA size

17,311 bp

RefSeq NC_011607.1

GC content

38.55%

Whole genome

Non-coding

1,953 bp

D-loop 1,872 bp

Where Common wall lizard sits among 2,335 species

Whole-genome GC content against maximum lifespan. Common wall lizard has the 1,568th longest lifespan of them.

This species
Other reptiles
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,311 bp

GC skew (G − C) / (G + C): −0.333
AT skew (A − T) / (A + T): +0.033

Life history

Maximum lifespan: 10 years
Adult weight: 5.4 g

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03517)

About this record

Lifespan source: AnAge build 15
Based on: an observed animal, origin not stated
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,311 bp

Protein-coding11,344 bp

12S rRNA955 bp

16S rRNA1,538 bp

All tRNA1,526 bp

D-loop1,872 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Podarcis muralis genes

ND1NADH dehydrogenase subunit 1	969 bp	31.5%	31.2%	11.6%	25.8%	37.36%	−0.381	+0.005
ND2NADH dehydrogenase subunit 2	1,030 bp	34.3%	29.8%	8.8%	27.1%	35.92%	−0.508	+0.070
COX1Cytochrome c oxidase subunit I	1,545 bp	27.1%	34.2%	16.4%	22.3%	38.77%	−0.152	−0.116
COX2Cytochrome c oxidase subunit II	688 bp	32.6%	30.4%	13.1%	24.0%	37.06%	−0.294	+0.035
ATP8ATP synthase F0 subunit 8	162 bp	36.4%	32.1%	5.6%	25.9%	31.48%	−0.647	+0.063
ATP6ATP synthase F0 subunit 6	681 bp	32.0%	32.2%	9.5%	26.3%	35.83%	−0.467	−0.002
COX3Cytochrome c oxidase subunit III	784 bp	29.0%	29.5%	15.6%	26.0%	41.58%	−0.252	−0.009
ND3NADH dehydrogenase subunit 3	347 bp	29.7%	32.3%	13.0%	25.1%	38.04%	−0.318	−0.042
ND4LNADH dehydrogenase subunit 4L	297 bp	28.3%	34.7%	11.4%	25.6%	37.04%	−0.382	−0.102
ND4NADH dehydrogenase subunit 4	1,381 bp	30.4%	32.7%	9.8%	27.2%	36.93%	−0.471	−0.036
ND5NADH dehydrogenase subunit 5	1,824 bp	32.8%	28.6%	10.9%	27.7%	38.60%	−0.438	+0.070
ND6NADH dehydrogenase subunit 6	516 bp	45.0%	17.2%	7.6%	30.2%	37.79%	−0.600	+0.445
CYTBCytochrome b	1,143 bp	27.6%	33.8%	11.9%	26.7%	38.58%	−0.383	−0.100
12S rRNA12S ribosomal RNA	955 bp	35.0%	23.6%	18.2%	23.2%	41.47%	−0.121	+0.195
16S rRNA16S ribosomal RNA	1,538 bp	36.7%	22.9%	16.5%	23.9%	40.44%	−0.183	+0.231
D-loopControl region (D-loop)	1,872 bp	27.6%	34.1%	11.3%	27.1%	38.36%	−0.412	−0.106

Codon usage

Counts per codon, darker is more frequent

Gene

3,787 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%

UUU156

UUC65

Leu L16.8%

UUA199

UUG18

CUU146

CUC79

CUA168

CUG26

Ile I9.0%

AUU256

AUC84

Met M5.7%

AUA191

AUG24

Val V4.3%

GUU63

GUC31

GUA57

GUG13

Ser S6.6%

UCU56

UCC55

UCA90

UCG2

AGU24

AGC23

Pro P5.5%

CCU47

CCC41

CCA121

CCG1

Thr T8.9%

ACU74

ACC113

ACA143

ACG7

Ala A7.4%

GCU76

GCC109

GCA92

GCG2

Tyr Y3.0%

UAU70

UAC43

His H2.8%

CAU44

CAC61

Gln Q2.5%

CAA84

CAG9

Asn N3.9%

AAU60

AAC86

Lys K2.3%

AAA84

AAG3

Asp D1.8%

GAU39

GAC28

Glu E2.3%

GAA76

GAG12

Cys C0.7%

UGU10

UGC18

Trp W2.8%

UGA97

UGG8

Arg R1.9%

CGU13

CGC14

CGA43

CGG2

Gly G5.9%

GGU45

GGC74

GGA84

GGG20

Stop 0.2%

UAA6

UAG0

AGA0

AGG2

Genome map

38 annotated features in NC_011607.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Podarcis muralis (NC_011607.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	73	73 bp	+	–
12S rRNA	Ribosomal RNA	74	1,028	955 bp	+	41.5%
tRNA-Val	Transfer RNA	1,029	1,098	70 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,636	1,538 bp	+	40.4%
tRNA-Leu (UUR)	Transfer RNA	2,637	2,709	73 bp	+	–
ND1	Protein-coding gene	2,710	3,678	969 bp	+	37.4%
tRNA-Ile	Transfer RNA	3,686	3,757	72 bp	+	–
tRNA-Gln	Transfer RNA	3,758	3,828	71 bp	−	–
tRNA-Met	Transfer RNA	3,828	3,895	68 bp	+	–
ND2	Protein-coding gene	3,896	4,925	1,030 bp	+	35.9%
tRNA-Trp	Transfer RNA	4,926	4,994	69 bp	+	–
tRNA-Ala	Transfer RNA	4,997	5,065	69 bp	−	–
tRNA-Asn	Transfer RNA	5,068	5,140	73 bp	−	–
tRNA-Cys	Transfer RNA	5,190	5,256	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,259	5,329	71 bp	−	–
COX1	Protein-coding gene	5,331	6,875	1,545 bp	+	38.8%
tRNA-Ser (UCN)	Transfer RNA	6,871	6,943	73 bp	−	–
tRNA-Asp	Transfer RNA	6,946	7,015	70 bp	+	–
COX2	Protein-coding gene	7,016	7,703	688 bp	+	37.1%
tRNA-Lys	Transfer RNA	7,704	7,768	65 bp	+	–
ATP8	Protein-coding gene	7,770	7,931	162 bp	+	31.5%
ATP6	Protein-coding gene	7,922	8,602	681 bp	+	35.8%
COX3	Protein-coding gene	8,602	9,385	784 bp	+	41.6%
tRNA-Gly	Transfer RNA	9,386	9,453	68 bp	+	–
ND3	Protein-coding gene	9,454	9,800	347 bp	+	38.0%
tRNA-Arg	Transfer RNA	9,801	9,867	67 bp	+	–
ND4L	Protein-coding gene	9,869	10,165	297 bp	+	37.0%
ND4	Protein-coding gene	10,159	11,539	1,381 bp	+	36.9%
tRNA-His	Transfer RNA	11,540	11,607	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,610	11,673	64 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,673	11,743	71 bp	+	–
ND5	Protein-coding gene	11,747	13,570	1,824 bp	+	38.6%
ND6	Protein-coding gene	13,566	14,081	516 bp	−	37.8%
tRNA-Glu	Transfer RNA	14,082	14,150	69 bp	−	–
CYTB	Protein-coding gene	14,156	15,298	1,143 bp	+	38.6%
tRNA-Thr	Transfer RNA	15,303	15,370	68 bp	+	–
tRNA-Pro	Transfer RNA	15,371	15,439	69 bp	−	–
D-loop	Control region	15,440	17,311	1,872 bp	–	38.4%