family · mtDNA statistics

Moronidae

3 species in 2 genera. Every region of their mitochondrial genomes, side by side.

Group

species

45.2%

mean GC, whole genome

SD 0.2, range 44.9–45.3%

17,966

median genome length, bp

Range 17,580–18,253 bp

genera

Regions

GC content of each region across Moronidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	45.15%	0.23	0.005	44.89%Morone saxatilis	45.27%	45.30%Dicentrarchus labrax	–	–
Protein-coding	3	46.44%	0.69	0.015	45.84%Morone saxatilis	46.28%	47.20%Dicentrarchus labrax	–	–
All rRNA	3	47.08%	1.00	0.021	46.49%Morone saxatilis	46.52%	48.23%Dicentrarchus labrax	–	–
All tRNA	3	44.55%	1.00	0.022	43.65%Morone saxatilis	44.37%	45.62%Dicentrarchus labrax	–	–
12S rRNA	3	48.79%	0.69	0.014	48.33%Morone americana	48.46%	49.58%Dicentrarchus labrax	–	–
16S rRNA	3	46.11%	1.18	0.026	45.37%Morone saxatilis	45.50%	47.47%Dicentrarchus labrax	–	–
D-loop	3	37.21%	5.17	0.139	31.25%Dicentrarchus labrax	40.12%	40.28%Morone americana	–	–
ND1	3	46.63%	1.34	0.029	45.23%Morone americana	46.77%	47.90%Dicentrarchus labrax	–	–
ND2	3	48.13%	2.21	0.046	46.41%Morone saxatilis	47.37%	50.62%Dicentrarchus labrax	–	–
COX1	3	45.88%	0.15	0.003	45.71%Morone saxatilis	45.94%	45.99%Morone americana	–	–
COX2	3	44.67%	0.44	0.010	44.28%Morone saxatilis	44.57%	45.15%Morone americana	–	–
ATP8	3	43.25%	1.91	0.044	41.07%Morone americana	44.05%	44.64%Dicentrarchus labrax	–	–
ATP6	3	47.37%	0.39	0.008	47.08%Dicentrarchus labrax	47.22%	47.81%Morone americana	–	–
COX3	3	47.09%	1.95	0.041	45.61%Morone saxatilis	46.37%	49.30%Dicentrarchus labrax	–	–
ND3	3	52.24%	1.19	0.023	51.29%Morone americana	51.86%	53.58%Dicentrarchus labrax	–	–
ND4L	3	49.16%	0.67	0.014	48.48%Morone americana	49.16%	49.83%Dicentrarchus labrax	–	–
ND4	3	46.46%	1.75	0.038	45.11%Morone saxatilis	45.84%	48.44%Dicentrarchus labrax	–	–
ND5	3	45.49%	0.53	0.012	44.90%Morone saxatilis	45.66%	45.93%Dicentrarchus labrax	–	–
ND6	3	48.04%	1.16	0.024	46.82%Morone americana	48.17%	49.13%Dicentrarchus labrax	–	–
CYTB	3	43.97%	1.70	0.039	42.51%Dicentrarchus labrax	43.56%	45.84%Morone americana	–	–

Genera of Moronidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Moronidae

Morone	2	45.08%	0.27	0.006	44.89%Morone saxatilis	45.08%	45.27%Morone americana	–	–
Dicentrarchus	1	45.30%	–	–	45.30%Dicentrarchus labrax	45.30%	45.30%Dicentrarchus labrax	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Moronidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Moronidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.