Dicentrarchus labrax

European seabass

Maximum lifespan

15 yr

AnAge record

mtDNA size

18,253 bp

RefSeq NC_026074.1

GC content

45.30%

Whole genome

Non-coding

2,631 bp

D-loop 2,109 bp

Where European seabass sits among 2,335 species

Whole-genome GC content against maximum lifespan. European seabass has the 1,209th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome18,253 bp

GC skew (G − C) / (G + C): −0.228
AT skew (A − T) / (A + T): −0.005

Life history

Maximum lifespan: 15 years
Adult weight: 6.6 kg
Female sexual maturity: 4 years
Male sexual maturity: 2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04244)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome18,253 bp

Protein-coding11,422 bp

12S rRNA958 bp

16S rRNA1,700 bp

All tRNA1,554 bp

D-loop2,109 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dicentrarchus labrax genes

ND1NADH dehydrogenase subunit 1	975 bp	23.6%	28.5%	15.4%	32.5%	47.90%	−0.358	−0.094
ND2NADH dehydrogenase subunit 2	1,045 bp	23.9%	25.5%	12.9%	37.7%	50.62%	−0.490	−0.031
COX1Cytochrome c oxidase subunit I	1,563 bp	24.1%	30.0%	18.3%	27.6%	45.94%	−0.203	−0.110
COX2Cytochrome c oxidase subunit II	691 bp	27.1%	28.4%	18.4%	26.2%	44.57%	−0.175	−0.024
ATP8ATP synthase F0 subunit 8	168 bp	27.4%	28.0%	11.3%	33.3%	44.64%	−0.493	−0.011
ATP6ATP synthase F0 subunit 6	684 bp	23.8%	29.1%	14.2%	32.9%	47.08%	−0.398	−0.099
COX3Cytochrome c oxidase subunit III	785 bp	23.2%	27.5%	18.9%	30.4%	49.30%	−0.235	−0.085
ND3NADH dehydrogenase subunit 3	349 bp	17.8%	28.7%	18.1%	35.5%	53.58%	−0.326	−0.235
ND4LNADH dehydrogenase subunit 4L	297 bp	19.9%	30.3%	15.8%	34.0%	49.83%	−0.365	−0.208
ND4NADH dehydrogenase subunit 4	1,381 bp	24.3%	27.3%	16.1%	32.4%	48.44%	−0.336	−0.059
ND5NADH dehydrogenase subunit 5	1,842 bp	26.3%	27.7%	15.7%	30.2%	45.93%	−0.314	−0.026
ND6NADH dehydrogenase subunit 6	519 bp	32.8%	18.1%	16.2%	32.9%	49.13%	−0.341	+0.288
CYTBCytochrome b	1,141 bp	24.7%	32.8%	16.4%	26.1%	42.51%	−0.229	−0.140
12S rRNA12S ribosomal RNA	958 bp	29.1%	21.3%	23.3%	26.3%	49.58%	−0.061	+0.155
16S rRNA16S ribosomal RNA	1,700 bp	30.6%	21.9%	21.6%	25.8%	47.47%	−0.088	+0.165
D-loopControl region (D-loop)	2,109 bp	34.3%	34.5%	15.6%	15.6%	31.25%	−0.002	−0.003

Codon usage

Counts per codon, darker is more frequent

Gene

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU97

UUC142

Leu L17.7%

UUA114

UUG24

CUU153

CUC173

CUA149

CUG61

Ile I6.9%

AUU158

AUC106

Met M4.2%

AUA117

AUG42

Val V5.8%

GUU65

GUC60

GUA76

GUG21

Ser S6.3%

UCU40

UCC82

UCA49

UCG12

AGU16

AGC41

Pro P5.7%

CCU68

CCC90

CCA49

CCG12

Thr T7.6%

ACU61

ACC113

ACA97

ACG18

Ala A9.1%

GCU62

GCC167

GCA90

GCG28

Tyr Y2.9%

UAU37

UAC72

His H2.8%

CAU25

CAC80

Gln Q2.7%

CAA83

CAG19

Asn N2.9%

AAU44

AAC65

Lys K1.8%

AAA52

AAG17

Asp D2.1%

GAU30

GAC50

Glu E2.7%

GAA61

GAG40

Cys C0.8%

UGU13

UGC16

Trp W3.1%

UGA86

UGG33

Arg R2.1%

CGU6

CGC19

CGA37

CGG18

Gly G6.5%

GGU31

GGC98

GGA55

GGG64

Stop 0.2%

UAA6

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_026074.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dicentrarchus labrax (NC_026074.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,026	958 bp	+	49.6%
tRNA-Val	Transfer RNA	1,029	1,100	72 bp	+	–
16S rRNA	Ribosomal RNA	1,101	2,800	1,700 bp	+	47.5%
tRNA-Leu (UUR)	Transfer RNA	2,887	2,960	74 bp	+	–
ND1	Protein-coding gene	2,961	3,935	975 bp	+	47.9%
tRNA-Ile	Transfer RNA	3,940	4,009	70 bp	+	–
tRNA-Gln	Transfer RNA	4,009	4,079	71 bp	−	–
tRNA-Met	Transfer RNA	4,079	4,149	71 bp	+	–
ND2	Protein-coding gene	4,150	5,194	1,045 bp	+	50.6%
tRNA-Trp	Transfer RNA	5,195	5,267	73 bp	+	–
tRNA-Ala	Transfer RNA	5,269	5,337	69 bp	−	–
tRNA-Asn	Transfer RNA	5,339	5,411	73 bp	−	–
tRNA-Cys	Transfer RNA	5,445	5,512	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,513	5,582	70 bp	−	–
COX1	Protein-coding gene	5,584	7,146	1,563 bp	+	45.9%
tRNA-Ser (UCN)	Transfer RNA	7,135	7,205	71 bp	−	–
tRNA-Asp	Transfer RNA	7,222	7,292	71 bp	+	–
COX2	Protein-coding gene	7,298	7,988	691 bp	+	44.6%
tRNA-Lys	Transfer RNA	7,989	8,062	74 bp	+	–
ATP8	Protein-coding gene	8,067	8,234	168 bp	+	44.6%
ATP6	Protein-coding gene	8,225	8,908	684 bp	+	47.1%
COX3	Protein-coding gene	8,908	9,692	785 bp	+	49.3%
tRNA-Gly	Transfer RNA	9,693	9,764	72 bp	+	–
ND3	Protein-coding gene	9,765	10,113	349 bp	+	53.6%
tRNA-Arg	Transfer RNA	10,114	10,182	69 bp	+	–
ND4L	Protein-coding gene	10,183	10,479	297 bp	+	49.8%
ND4	Protein-coding gene	10,473	11,853	1,381 bp	+	48.4%
tRNA-His	Transfer RNA	11,854	11,922	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,923	11,991	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,997	12,069	73 bp	+	–
ND5	Protein-coding gene	12,070	13,911	1,842 bp	+	45.9%
tRNA-Glu	Transfer RNA	14,272	14,340	69 bp	−	–
CYTB	Protein-coding gene	14,345	15,485	1,141 bp	+	42.5%
tRNA-Thr	Transfer RNA	15,486	15,556	71 bp	+	–
tRNA-Pro	Transfer RNA	15,556	15,625	70 bp	−	–
D-loop	Control region	15,626	18,253	2,628 bp	–	31.3%
ND6	Protein-coding gene	17,577	18,095	519 bp	−	49.1%