family · mtDNA statistics

Percichthyidae

8 species in 6 genera. Every region of their mitochondrial genomes, side by side.

Group

species

44.5%

mean GC, whole genome

SD 1.6, range 42.0–46.4%

16,508

median genome length, bp

Range 16,442–16,621 bp

genera

Regions

GC content of each region across Percichthyidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	8	44.55%	1.56	0.035	42.04%Maccullochella peelii	44.89%	46.35%Nannatherina balstoni	−0.45	0.26
Protein-coding	8	44.83%	1.74	0.039	42.37%Maccullochella peelii	45.17%	46.99%Nannatherina balstoni	−0.37	0.37
All rRNA	8	45.87%	1.12	0.024	44.00%Maccullochella peelii	46.37%	46.97%Macquaria ambigua	−0.46	0.25
All tRNA	8	44.33%	1.17	0.026	42.24%Maccullochella peelii	44.86%	45.45%Macquaria ambigua	−0.51	0.2
12S rRNA	8	48.04%	0.96	0.020	46.83%Nannoperca variegata	48.15%	49.42%Macquaria ambigua	−0.12	0.78
16S rRNA	8	44.67%	1.35	0.030	42.33%Maccullochella peelii	45.07%	46.15%Nannatherina balstoni	−0.55	0.16
D-loop	8	36.32%	2.80	0.077	29.95%Maccullochella peelii	37.17%	38.87%Nannoperca vittata	−0.85	0.007
ND1	8	46.00%	1.94	0.042	42.56%Bostockia porosa	46.15%	48.51%Nannatherina balstoni	−0.27	0.53
ND2	8	46.65%	2.26	0.048	43.36%Maccullochella peelii	46.89%	49.81%Nannatherina balstoni	−0.50	0.21
COX1	8	44.78%	1.58	0.035	42.42%Maccullochella peelii	44.94%	46.81%Nannatherina balstoni	−0.33	0.42
COX2	8	42.55%	1.78	0.042	39.36%Maccullochella peelii	42.84%	45.30%Macquaria ambigua	−0.30	0.47
ATP8	8	43.82%	4.47	0.102	35.12%Maccullochella peelii	44.64%	48.81%Macquaria ambigua	−0.50	0.2
ATP6	8	42.48%	1.99	0.047	39.97%Percilia irwini	42.91%	45.61%Nannatherina balstoni	−0.32	0.45
COX3	8	46.31%	1.74	0.038	43.38%Maccullochella peelii	46.69%	48.41%Nannatherina balstoni	−0.60	0.11
ND3	8	46.64%	2.75	0.059	42.12%Percilia irwini	46.70%	51.00%Nannoperca variegata	−0.14	0.75
ND4L	8	49.03%	2.29	0.047	45.12%Bostockia porosa	48.82%	52.86%Nannatherina balstoni	0.06	0.88
ND4	8	44.94%	2.11	0.047	41.43%Maccullochella peelii	45.80%	47.36%Nannoperca vittata	−0.48	0.22
ND5	8	43.36%	1.59	0.037	41.16%Bostockia porosa	43.01%	45.30%Nannoperca vittata	−0.11	0.8
ND6	8	44.04%	2.21	0.050	41.38%Maccullochella peelii	44.25%	47.89%Nannatherina balstoni	−0.38	0.36
CYTB	8	44.76%	2.18	0.049	42.39%Maccullochella peelii	44.79%	47.24%Nannoperca australis	−0.26	0.54

Genera of Percichthyidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Percichthyidae

Nannoperca	3	45.17%	0.59	0.013	44.55%Nannoperca variegata	45.23%	45.73%Nannoperca vittata	–	–
Maccullochella	1	42.04%	–	–	42.04%Maccullochella peelii	42.04%	42.04%Maccullochella peelii	–	–
Macquaria	1	45.96%	–	–	45.96%Macquaria ambigua	45.96%	45.96%Macquaria ambigua	–	–
Bostockia	1	42.92%	–	–	42.92%Bostockia porosa	42.92%	42.92%Bostockia porosa	–	–
Nannatherina	1	46.35%	–	–	46.35%Nannatherina balstoni	46.35%	46.35%Nannatherina balstoni	–	–
Percilia	1	43.57%	–	–	43.57%Percilia irwini	43.57%	43.57%Percilia irwini	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Percichthyidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Percichthyidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.