Macquaria ambigua

Golden perch

Maximum lifespan

20 yr

AnAge record

mtDNA size

16,502 bp

RefSeq NC_024849.1

GC content

45.96%

Whole genome

Non-coding

887 bp

D-loop 826 bp

Where Golden perch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Golden perch has the 897th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,502 bp

GC skew (G − C) / (G + C): −0.295
AT skew (A − T) / (A + T): +0.045

Life history

Maximum lifespan: 20 years
Adult weight: 13.2 kg
Female sexual maturity: 4.5 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04259)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,502 bp

Protein-coding11,407 bp

12S rRNA951 bp

16S rRNA1,708 bp

All tRNA1,549 bp

D-loop826 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Macquaria ambigua genes

ND1NADH dehydrogenase subunit 1	975 bp	25.6%	26.3%	15.4%	32.7%	48.10%	−0.360	−0.012
ND2NADH dehydrogenase subunit 2	1,046 bp	27.4%	24.9%	11.5%	36.2%	47.71%	−0.519	+0.049
COX1Cytochrome c oxidase subunit I	1,551 bp	24.2%	29.1%	18.2%	28.4%	46.68%	−0.218	−0.093
COX2Cytochrome c oxidase subunit II	691 bp	27.8%	26.9%	15.9%	29.4%	45.30%	−0.297	+0.016
ATP8ATP synthase F0 subunit 8	168 bp	28.6%	22.6%	14.9%	33.9%	48.81%	−0.390	+0.116
ATP6ATP synthase F0 subunit 6	683 bp	25.9%	30.6%	12.7%	30.7%	43.49%	−0.414	−0.083
COX3Cytochrome c oxidase subunit III	785 bp	25.2%	28.0%	16.8%	29.9%	46.75%	−0.281	−0.053
ND3NADH dehydrogenase subunit 3	349 bp	21.8%	29.2%	15.8%	33.2%	49.00%	−0.357	−0.146
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	27.3%	14.8%	36.4%	51.18%	−0.421	−0.117
ND4NADH dehydrogenase subunit 4	1,381 bp	27.3%	26.4%	13.8%	32.5%	46.34%	−0.403	+0.018
ND5NADH dehydrogenase subunit 5	1,839 bp	27.4%	27.4%	13.3%	31.9%	45.24%	−0.411	−0.001
ND6NADH dehydrogenase subunit 6	522 bp	39.7%	14.4%	12.6%	33.3%	45.98%	−0.450	+0.468
CYTBCytochrome b	1,141 bp	24.5%	29.2%	13.8%	32.4%	46.28%	−0.402	−0.086
12S rRNA12S ribosomal RNA	951 bp	30.2%	20.4%	22.4%	27.0%	49.42%	−0.094	+0.193
16S rRNA16S ribosomal RNA	1,708 bp	33.3%	21.1%	20.3%	25.3%	45.61%	−0.109	+0.225
D-loopControl region (D-loop)	826 bp	33.4%	30.8%	16.0%	19.9%	35.84%	−0.108	+0.042

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU114

UUC119

Leu L17.5%

UUA89

UUG23

CUU143

CUC189

CUA187

CUG34

Ile I7.1%

AUU147

AUC122

Met M3.9%

AUA102

AUG47

Val V5.8%

GUU60

GUC61

GUA68

GUG30

Ser S6.5%

UCU41

UCC83

UCA60

UCG7

AGU12

AGC45

Pro P5.9%

CCU56

CCC108

CCA53

CCG9

Thr T7.9%

ACU52

ACC124

ACA116

ACG9

Ala A9.0%

GCU58

GCC163

GCA113

GCG10

Tyr Y3.0%

UAU50

UAC65

His H2.8%

CAU27

CAC79

Gln Q2.6%

CAA88

CAG10

Asn N3.2%

AAU32

AAC88

Lys K1.9%

AAA66

AAG8

Asp D2.0%

GAU25

GAC51

Glu E2.6%

GAA77

GAG22

Cys C0.6%

UGU7

UGC17

Trp W3.1%

UGA97

UGG22

Arg R2.0%

CGU3

CGC17

CGA45

CGG10

Gly G6.3%

GGU43

GGC89

GGA69

GGG39

Stop 0.2%

UAA5

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_024849.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Macquaria ambigua (NC_024849.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,019	951 bp	+	49.4%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,799	1,708 bp	+	45.6%
tRNA-Leu (UUR)	Transfer RNA	2,800	2,873	74 bp	+	–
ND1	Protein-coding gene	2,874	3,848	975 bp	+	48.1%
tRNA-Ile	Transfer RNA	3,853	3,922	70 bp	+	–
tRNA-Gln	Transfer RNA	3,922	3,992	71 bp	−	–
tRNA-Met	Transfer RNA	3,992	4,061	70 bp	+	–
ND2	Protein-coding gene	4,062	5,107	1,046 bp	+	47.7%
tRNA-Trp	Transfer RNA	5,108	5,178	71 bp	+	–
tRNA-Ala	Transfer RNA	5,180	5,248	69 bp	−	–
tRNA-Asn	Transfer RNA	5,250	5,322	73 bp	−	–
tRNA-Cys	Transfer RNA	5,358	5,422	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,423	5,493	71 bp	−	–
COX1	Protein-coding gene	5,495	7,045	1,551 bp	+	46.7%
tRNA-Ser (UCN)	Transfer RNA	7,046	7,116	71 bp	−	–
tRNA-Asp	Transfer RNA	7,120	7,191	72 bp	+	–
COX2	Protein-coding gene	7,199	7,889	691 bp	+	45.3%
tRNA-Lys	Transfer RNA	7,890	7,963	74 bp	+	–
ATP8	Protein-coding gene	7,965	8,132	168 bp	+	48.8%
ATP6	Protein-coding gene	8,123	8,805	683 bp	+	43.5%
COX3	Protein-coding gene	8,806	9,590	785 bp	+	46.8%
tRNA-Gly	Transfer RNA	9,591	9,662	72 bp	+	–
ND3	Protein-coding gene	9,663	10,011	349 bp	+	49.0%
tRNA-Arg	Transfer RNA	10,012	10,080	69 bp	+	–
ND4L	Protein-coding gene	10,081	10,377	297 bp	+	51.2%
ND4	Protein-coding gene	10,371	11,751	1,381 bp	+	46.3%
tRNA-His	Transfer RNA	11,752	11,820	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,821	11,887	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,892	11,964	73 bp	+	–
ND5	Protein-coding gene	11,965	13,803	1,839 bp	+	45.2%
ND6	Protein-coding gene	13,800	14,321	522 bp	−	46.0%
tRNA-Glu	Transfer RNA	14,322	14,390	69 bp	−	–
CYTB	Protein-coding gene	14,395	15,535	1,141 bp	+	46.3%
tRNA-Thr	Transfer RNA	15,536	15,607	72 bp	+	–
tRNA-Pro	Transfer RNA	15,607	15,676	70 bp	−	–
D-loop	Control region	15,677	16,502	826 bp	–	35.8%