family · mtDNA statistics

Phyllostomidae

10 species in 9 genera. Every region of their mitochondrial genomes, side by side.

Group

species

40.9%

mean GC, whole genome

SD 2.9, range 37.3–47.6%

16,674

median genome length, bp

Range 16,470–16,792 bp

genera

Regions

GC content of each region across Phyllostomidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	10	40.91%	2.87	0.070	37.29%Glossophaga soricina	40.75%	47.61%Desmodus rotundus	0.39	0.27
Protein-coding	10	40.92%	3.34	0.082	36.70%Glossophaga soricina	40.72%	48.61%Desmodus rotundus	0.35	0.33
All rRNA	10	41.93%	2.42	0.058	39.42%Artibeus jamaicensis	41.70%	47.85%Desmodus rotundus	0.38	0.27
All tRNA	10	37.37%	2.18	0.058	35.33%Anoura geoffroyi	36.47%	42.64%Desmodus rotundus	0.55	0.1
12S rRNA	10	43.47%	2.73	0.063	40.93%Glossophaga soricina	42.97%	50.73%Desmodus rotundus	0.56	0.09
16S rRNA	10	40.97%	2.37	0.058	37.46%Artibeus jamaicensis	40.90%	46.08%Desmodus rotundus	0.24	0.51
D-loop	9	42.59%	2.23	0.052	39.19%Glossophaga soricina	42.59%	45.41%Carollia perspicillata	0.48	0.19
ND1	10	42.24%	3.30	0.078	37.34%Glossophaga soricina	42.05%	49.95%Desmodus rotundus	0.39	0.27
ND2	10	39.24%	3.40	0.087	33.88%Artibeus jamaicensis	39.07%	45.59%Desmodus rotundus	0.14	0.69
COX1	10	41.94%	3.01	0.072	38.58%Glossophaga soricina	41.42%	49.06%Desmodus rotundus	0.41	0.24
COX2	10	40.13%	3.38	0.084	37.13%Anoura geoffroyi	39.77%	48.68%Desmodus rotundus	0.55	0.1
ATP8	10	35.07%	5.08	0.145	27.45%Artibeus jamaicensis	34.80%	46.27%Desmodus rotundus	0.23	0.52
ATP6	10	39.72%	3.32	0.083	35.98%Artibeus jamaicensis	39.43%	46.84%Desmodus rotundus	0.20	0.58
COX3	10	43.00%	2.84	0.066	39.41%Glossophaga soricina	42.96%	49.36%Desmodus rotundus	0.36	0.3
ND3	10	41.05%	4.26	0.104	35.92%Artibeus jamaicensis	40.80%	48.28%Desmodus rotundus	0.21	0.56
ND4L	10	37.31%	4.63	0.124	30.30%Artibeus jamaicensis	36.87%	47.81%Desmodus rotundus	0.40	0.25
ND4	10	40.12%	3.55	0.088	35.12%Glossophaga soricina	40.20%	47.97%Desmodus rotundus	0.32	0.37
ND5	10	40.63%	3.48	0.086	36.19%Glossophaga soricina	40.53%	48.70%Desmodus rotundus	0.38	0.28
ND6	10	40.50%	4.55	0.112	35.80%Artibeus jamaicensis	39.11%	50.95%Desmodus rotundus	0.30	0.4
CYTB	10	43.04%	3.11	0.072	38.33%Glossophaga soricina	43.23%	50.00%Desmodus rotundus	0.35	0.32

Genera of Phyllostomidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Phyllostomidae

Macrotus	2	39.70%	0.08	0.002	39.64%Macrotus waterhousii	39.70%	39.76%Macrotus californicus	–	–
Artibeus	1	37.87%	–	–	37.87%Artibeus jamaicensis	37.87%	37.87%Artibeus jamaicensis	–	–
Carollia	1	41.45%	–	–	41.45%Carollia perspicillata	41.45%	41.45%Carollia perspicillata	–	–
Desmodus	1	47.61%	–	–	47.61%Desmodus rotundus	47.61%	47.61%Desmodus rotundus	–	–
Glossophaga	1	37.29%	–	–	37.29%Glossophaga soricina	37.29%	37.29%Glossophaga soricina	–	–
Leptonycteris	1	41.59%	–	–	41.59%Leptonycteris curasoae	41.59%	41.59%Leptonycteris curasoae	–	–
Phyllostomus	1	41.66%	–	–	41.66%Phyllostomus discolor	41.66%	41.66%Phyllostomus discolor	–	–
Anoura	1	40.06%	–	–	40.06%Anoura geoffroyi	40.06%	40.06%Anoura geoffroyi	–	–
Diphylla	1	42.19%	–	–	42.19%Diphylla ecaudata	42.19%	42.19%Diphylla ecaudata	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Phyllostomidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Phyllostomidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.