family · mtDNA statistics
Picidae
7 species in 5 genera. Every region of their mitochondrial genomes, side by side.
7
species
47.3%
mean GC, whole genome
SD 1.7, range 43.7–49.5%
16,840
median genome length, bp
Range 16,832–16,847 bp
5
genera
Regions
GC content of each region across Picidae, % of A + C + G + T| Region | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Whole genome | 7 | 47.26% | 1.75 | 43.70%Jynx torquilla | 47.46% | 49.50%Dryocopus pileatus | 0.56 | 0.19 | |
| Protein-coding | 7 | 47.99% | 2.01 | 43.93%Jynx torquilla | 48.27% | 50.66%Dryocopus pileatus | 0.55 | 0.2 | |
| All rRNA | 7 | 48.90% | 1.41 | 46.00%Jynx torquilla | 48.86% | 50.31%Dryocopus pileatus | 0.64 | 0.12 | |
| All tRNA | 7 | 44.26% | 1.03 | 42.11%Jynx torquilla | 44.54% | 45.04%Dryocopus pileatus | 0.63 | 0.13 | |
| 12S rRNA | 7 | 51.46% | 2.27 | 48.66%Jynx torquilla | 51.28% | 56.00%Dryobates minor | −0.16 | 0.73 | |
| 16S rRNA | 7 | 47.70% | 1.71 | 44.39%Jynx torquilla | 48.05% | 49.72%Dryocopus pileatus | 0.72 | 0.07 | |
| D-loop | 6 | 41.67% | 1.68 | 39.05%Jynx torquilla | 41.86% | 43.46%Picoides tridactylus | 0.19 | 0.72 | |
| ND1 | 7 | 49.55% | 1.86 | 45.79%Jynx torquilla | 49.90% | 51.75%Dryocopus pileatus | 0.57 | 0.18 | |
| ND2 | 7 | 46.68% | 2.03 | 42.35%Jynx torquilla | 47.12% | 48.61%Dryocopus pileatus | 0.66 | 0.11 | |
| COX1 | 7 | 48.58% | 1.90 | 44.94%Jynx torquilla | 48.81% | 51.26%Dryocopus pileatus | 0.52 | 0.23 | |
| COX2 | 7 | 46.22% | 2.05 | 42.84%Jynx torquilla | 46.35% | 49.42%Dryocopus pileatus | 0.64 | 0.12 | |
| ATP8 | 7 | 42.86% | 2.98 | 37.50%Jynx torquilla | 42.86% | 47.62%Dryocopus pileatus | 0.58 | 0.17 | |
| ATP6 | 7 | 48.93% | 2.83 | 43.42%Jynx torquilla | 50.00% | 52.34%Dryocopus pileatus | 0.25 | 0.59 | |
| COX3 | 7 | 49.13% | 1.82 | 45.15%Jynx torquilla | 49.62% | 50.89%Dryocopus pileatus | 0.48 | 0.27 | |
| ND3 | 7 | 47.74% | 3.43 | 40.17%Jynx torquilla | 49.00% | 49.86%Dryocopus pileatus | 0.57 | 0.18 | |
| ND4L | 7 | 47.43% | 1.46 | 45.79%Jynx torquilla | 47.14% | 50.17%Dryocopus pileatus | 0.33 | 0.47 | |
| ND4 | 7 | 47.75% | 2.28 | 43.42%Jynx torquilla | 47.88% | 51.10%Dryocopus pileatus | 0.57 | 0.18 | |
| ND5 | 7 | 47.33% | 2.58 | 42.09%Jynx torquilla | 47.88% | 50.63%Dryocopus pileatus | 0.54 | 0.21 | |
| ND6 | 7 | 47.04% | 1.18 | 44.64%Jynx torquilla | 47.13% | 48.47%Dryocopus pileatus | 0.38 | 0.4 | |
| CYTB | 7 | 49.11% | 1.27 | 47.02%Jynx torquilla | 49.12% | 51.18%Dryocopus pileatus | 0.58 | 0.17 |
Genera of Picidae
GC content of the whole genome, % of A + C + G + T| Dendrocopos | 2 | 47.71% | 0.35 | 47.46%Dendrocopos major | 47.71% | 47.96%Dendrocopos leucotos | – | – | |
| Dryobates | 2 | 47.35% | 0.16 | 47.24%Dryobates pubescens | 47.35% | 47.46%Dryobates minor | – | – | |
| Dryocopus | 1 | 49.50% | – | 49.50%Dryocopus pileatus | 49.50% | 49.50%Dryocopus pileatus | – | – | |
| Picoides | 1 | 47.51% | – | 47.51%Picoides tridactylus | 47.51% | 47.51%Picoides tridactylus | – | – | |
| Jynx | 1 | 43.70% | – | 43.70%Jynx torquilla | 43.70% | 43.70%Jynx torquilla | – | – |
Codon usage
Share of each codon in all 13 protein-coding genes, across PicidaeLoading codon usage…
Every species, region by region
Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.
The charts
- Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
- Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
- Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
- Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.
What the numbers are
- Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
- Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
- Min and Max name the species with the extreme value.
Lifespan columns
r is the Pearson correlation of the parameter with log10 maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.
The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.