family · mtDNA statistics

Regulidae

3 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

44.4%

mean GC, whole genome

SD 0.1, range 44.3–44.5%

16,854

median genome length, bp

Range 16,847–16,859 bp

genus

Regions

GC content of each region across Regulidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	44.42%	0.07	0.002	44.35%Regulus satrapa	44.44%	44.48%Regulus regulus	–	–
Protein-coding	3	44.75%	0.00	0.000	44.75%Regulus calendula	44.75%	44.75%Regulus calendula	–	–
All rRNA	3	45.40%	0.08	0.002	45.31%Regulus regulus	45.43%	45.47%Regulus calendula	–	–
All tRNA	3	41.45%	0.29	0.007	41.13%Regulus satrapa	41.57%	41.66%Regulus calendula	–	–
12S rRNA	3	47.61%	0.38	0.008	47.24%Regulus satrapa	47.58%	48.00%Regulus calendula	–	–
16S rRNA	3	44.05%	0.23	0.005	43.91%Regulus regulus	43.92%	44.32%Regulus satrapa	–	–
D-loop	2	45.07%	1.74	0.039	43.83%Regulus regulus	45.07%	46.30%Regulus calendula	–	–
ND1	3	44.41%	0.67	0.015	43.76%Regulus calendula	44.38%	45.09%Regulus satrapa	–	–
ND2	3	41.83%	0.35	0.008	41.54%Regulus calendula	41.73%	42.21%Regulus satrapa	–	–
COX1	3	45.53%	0.44	0.010	45.26%Regulus regulus	45.29%	46.03%Regulus calendula	–	–
COX2	3	44.54%	1.17	0.026	43.42%Regulus calendula	44.44%	45.76%Regulus regulus	–	–
ATP8	3	39.68%	1.24	0.031	38.69%Regulus calendula	39.29%	41.07%Regulus regulus	–	–
ATP6	3	43.27%	0.29	0.007	42.98%Regulus regulus	43.27%	43.57%Regulus satrapa	–	–
COX3	3	46.71%	0.76	0.016	46.17%Regulus regulus	46.37%	47.58%Regulus calendula	–	–
ND3	3	43.78%	0.59	0.014	43.30%Regulus satrapa	43.59%	44.44%Regulus regulus	–	–
ND4L	3	47.36%	0.85	0.018	46.46%Regulus regulus	47.47%	48.15%Regulus satrapa	–	–
ND4	3	44.56%	0.51	0.011	44.05%Regulus calendula	44.56%	45.07%Regulus regulus	–	–
ND5	3	44.33%	0.19	0.004	44.11%Regulus regulus	44.44%	44.44%Regulus calendula	–	–
ND6	3	48.62%	0.99	0.020	47.78%Regulus satrapa	48.36%	49.71%Regulus regulus	–	–
CYTB	3	45.61%	0.83	0.018	44.97%Regulus regulus	45.32%	46.54%Regulus calendula	–	–

Genera of Regulidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Regulidae

Regulus	3	44.42%	0.07	0.002	44.35%Regulus satrapa	44.44%	44.48%Regulus regulus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Regulidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Regulidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.