family · mtDNA statistics

Solenoceridae

3 species in 2 genera. Every region of their mitochondrial genomes, side by side.

Group

species

32.1%

mean GC, whole genome

SD 0.3, range 31.8–32.3%

15,946

median genome length, bp

Range 15,940–16,189 bp

genera

Regions

GC content of each region across Solenoceridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	32.15%	0.32	0.010	31.78%Pleoticus muelleri	32.33%	32.33%Solenocera crassicornis	–	–
Protein-coding	3	33.90%	0.44	0.013	33.39%Pleoticus muelleri	34.15%	34.16%Solenocera crassicornis	–	–
All rRNA	3	29.36%	0.38	0.013	28.96%Pleoticus muelleri	29.40%	29.72%Solenocera melantho	–	–
All tRNA	3	33.42%	0.05	0.001	33.38%Pleoticus muelleri	33.40%	33.47%Solenocera melantho	–	–
12S rRNA	3	30.15%	1.10	0.036	29.47%Solenocera crassicornis	29.56%	31.41%Pleoticus muelleri	–	–
16S rRNA	3	28.82%	1.34	0.046	27.30%Pleoticus muelleri	29.35%	29.81%Solenocera melantho	–	–
D-loop	2	19.44%	3.01	0.155	17.31%Solenocera crassicornis	19.44%	21.57%Pleoticus muelleri	–	–
ND1	3	31.70%	0.06	0.002	31.63%Pleoticus muelleri	31.74%	31.74%Solenocera crassicornis	–	–
ND2	3	33.17%	0.40	0.012	32.93%Solenocera crassicornis	32.93%	33.63%Pleoticus muelleri	–	–
COX1	3	38.02%	1.25	0.033	36.58%Pleoticus muelleri	38.69%	38.79%Solenocera crassicornis	–	–
COX2	3	36.00%	1.09	0.030	34.74%Pleoticus muelleri	36.63%	36.63%Solenocera crassicornis	–	–
ATP8	3	25.79%	2.18	0.084	23.27%Pleoticus muelleri	27.04%	27.04%Solenocera crassicornis	–	–
ATP6	3	34.22%	1.03	0.030	33.63%Solenocera crassicornis	33.63%	35.41%Pleoticus muelleri	–	–
COX3	3	39.16%	1.02	0.026	37.97%Pleoticus muelleri	39.75%	39.75%Solenocera crassicornis	–	–
ND3	3	35.32%	0.82	0.023	34.38%Pleoticus muelleri	35.80%	35.80%Solenocera crassicornis	–	–
ND4L	3	29.44%	0.19	0.007	29.33%Solenocera crassicornis	29.33%	29.67%Pleoticus muelleri	–	–
ND4	3	31.37%	0.69	0.022	30.57%Pleoticus muelleri	31.77%	31.77%Solenocera crassicornis	–	–
ND5	3	30.43%	0.03	0.001	30.39%Pleoticus muelleri	30.45%	30.45%Solenocera crassicornis	–	–
ND6	3	30.81%	2.01	0.065	28.49%Pleoticus muelleri	31.98%	31.98%Solenocera crassicornis	–	–
CYTB	3	36.91%	0.10	0.003	36.85%Solenocera crassicornis	36.85%	37.03%Pleoticus muelleri	–	–

Genera of Solenoceridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Solenoceridae

Solenocera	2	32.33%	0.00	0.000	32.33%Solenocera melantho	32.33%	32.33%Solenocera crassicornis	–	–
Pleoticus	1	31.78%	–	–	31.78%Pleoticus muelleri	31.78%	31.78%Pleoticus muelleri	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Solenoceridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Solenoceridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.