Solenocera crassicornis
Udang merah
GC content
32.33%
Whole genome
Non-coding
1,110 bp
D-loop 1,005 bp
Where Udang merah sits among 2,335 species
Whole-genome GC content against maximum lifespan. Udang merah has the 2,290th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,946 bp
- GC skew (G − C) / (G + C)
- −0.311
- AT skew (A − T) / (A + T)
- +0.054
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,946 bp
Protein-coding11,145 bp
12S rRNA855 bp
16S rRNA1,356 bp
All tRNA1,485 bp
D-loop1,005 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 942 bp | 31.74% | −0.378 | +0.306 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,002 bp | 32.93% | −0.479 | −0.122 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 38.79% | −0.190 | −0.052 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 36.63% | −0.254 | −0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 27.04% | −0.674 | +0.052 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 33.63% | −0.322 | −0.085 | |||||
| COX3Cytochrome c oxidase subunit III | 790 bp | 39.75% | −0.204 | −0.076 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 35.80% | −0.333 | −0.035 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 29.33% | −0.409 | +0.340 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 31.77% | −0.413 | +0.322 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,724 bp | 30.45% | −0.322 | +0.234 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 31.98% | −0.515 | −0.100 | |||||
| CYTBCytochrome b | 1,137 bp | 36.85% | −0.298 | −0.078 | |||||
| 12S rRNA12S ribosomal RNA | 855 bp | 29.47% | −0.325 | +0.028 | |||||
| 16S rRNA16S ribosomal RNA | 1,356 bp | 29.35% | −0.407 | +0.040 | |||||
| D-loopControl region (D-loop) | 1,005 bp | 17.31% | −0.241 | −0.032 |
Codon usage
Counts per codon, darker is more frequent3,718 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.4%
UUU217
UUC94
Leu L16.1%
UUA271
UUG75
CUU81
CUC57
CUA107
CUG8
Ile I8.7%
AUU234
AUC89
Met M5.4%
AUA155
AUG44
Val V6.1%
GUU101
GUC15
GUA86
GUG24
Ser S9.6%
UCU100
UCC35
UCA76
UCG14
AGU38
AGC5
AGA73
AGG16
Pro P3.9%
CCU61
CCC37
CCA43
CCG5
Thr T5.5%
ACU75
ACC42
ACA82
ACG7
Ala A6.3%
GCU118
GCC56
GCA48
GCG11
Tyr Y3.6%
UAU98
UAC36
His H2.3%
CAU44
CAC40
Gln Q1.9%
CAA58
CAG13
Asn N3.8%
AAU97
AAC45
Lys K2.2%
AAA63
AAG19
Asp D2.0%
GAU46
GAC29
Glu E2.0%
GAA56
GAG19
Cys C1.2%
UGU36
UGC8
Trp W2.7%
UGA73
UGG28
Arg R1.6%
CGU10
CGC6
CGA38
CGG7
Gly G6.5%
GGU67
GGC15
GGA105
GGG54
Stop 0.2%
UAA6
UAG2
Genome map
38 annotated features in NC_030280.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (32.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Ile | Transfer RNA | 1 | 67 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 79 | 148 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 168 | 235 | 68 bp | + | – |
| ND2 | Protein-coding gene | 236 | 1,237 | 1,002 bp | + | 32.9% |
| tRNA-Trp | Transfer RNA | 1,236 | 1,304 | 69 bp | + | – |
| tRNA-Cys | Transfer RNA | 1,309 | 1,372 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 1,373 | 1,438 | 66 bp | − | – |
| COX1 | Protein-coding gene | 1,440 | 2,973 | 1,534 bp | + | 38.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,974 | 3,039 | 66 bp | + | – |
| COX2 | Protein-coding gene | 3,042 | 3,729 | 688 bp | + | 36.6% |
| tRNA-Lys | Transfer RNA | 3,730 | 3,798 | 69 bp | + | – |
| tRNA-Asp | Transfer RNA | 3,801 | 3,868 | 68 bp | + | – |
| ATP8 | Protein-coding gene | 3,870 | 4,028 | 159 bp | + | 27.0% |
| ATP6 | Protein-coding gene | 4,022 | 4,696 | 675 bp | + | 33.6% |
| COX3 | Protein-coding gene | 4,701 | 5,490 | 790 bp | + | 39.8% |
| tRNA-Gly | Transfer RNA | 5,491 | 5,557 | 67 bp | + | – |
| ND3 | Protein-coding gene | 5,557 | 5,908 | 352 bp | + | 35.8% |
| tRNA-Ala | Transfer RNA | 5,909 | 5,976 | 68 bp | + | – |
| tRNA-Arg | Transfer RNA | 5,976 | 6,040 | 65 bp | + | – |
| tRNA-Asn | Transfer RNA | 6,041 | 6,105 | 65 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 6,106 | 6,172 | 67 bp | + | – |
| tRNA-Glu | Transfer RNA | 6,173 | 6,242 | 70 bp | + | – |
| tRNA-Phe | Transfer RNA | 6,261 | 6,327 | 67 bp | − | – |
| ND5 | Protein-coding gene | 6,328 | 8,051 | 1,724 bp | − | 30.5% |
| tRNA-His | Transfer RNA | 8,062 | 8,127 | 66 bp | − | – |
| ND4 | Protein-coding gene | 8,128 | 9,468 | 1,341 bp | − | 31.8% |
| ND4L | Protein-coding gene | 9,462 | 9,761 | 300 bp | − | 29.3% |
| tRNA-Thr | Transfer RNA | 9,764 | 9,829 | 66 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,830 | 9,896 | 67 bp | − | – |
| ND6 | Protein-coding gene | 9,898 | 10,413 | 516 bp | + | 32.0% |
| CYTB | Protein-coding gene | 10,413 | 11,549 | 1,137 bp | + | 36.9% |
| tRNA-Ser | Transfer RNA | 11,548 | 11,617 | 70 bp | + | – |
| ND1 | Protein-coding gene | 11,632 | 12,573 | 942 bp | − | 31.7% |
| tRNA-Leu | Transfer RNA | 12,579 | 12,647 | 69 bp | − | – |
| 16S rRNA | Ribosomal RNA | 12,653 | 14,008 | 1,356 bp | − | 29.4% |
| tRNA-Val | Transfer RNA | 14,015 | 14,086 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,087 | 14,941 | 855 bp | − | 29.5% |
| D-loop | Control region | 14,942 | 15,946 | 1,005 bp | – | 17.3% |