order · mtDNA statistics

Aulopiformes

4 species in 1 family. Every region of their mitochondrial genomes, side by side.

Group

species

48.9%

mean GC, whole genome

SD 2.0, range 46.5–51.4%

16,235

median genome length, bp

Range 15,737–16,552 bp

family

Regions

GC content of each region across Aulopiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	48.87%	2.01	0.041	46.54%Harpadon microchir	48.78%	51.41%Trachinocephalus myops	–	–
Protein-coding	4	49.20%	1.98	0.040	46.75%Harpadon microchir	49.29%	51.46%Trachinocephalus myops	–	–
All rRNA	4	48.79%	2.39	0.049	46.40%Harpadon microchir	48.34%	52.08%Trachinocephalus myops	–	–
All tRNA	4	48.60%	2.63	0.054	46.74%Harpadon microchir	47.63%	52.41%Trachinocephalus myops	–	–
12S rRNA	4	50.21%	2.80	0.056	47.89%Harpadon microchir	49.34%	54.28%Trachinocephalus myops	–	–
16S rRNA	4	47.98%	2.19	0.046	45.55%Harpadon microchir	47.77%	50.84%Trachinocephalus myops	–	–
D-loop	3	44.99%	6.77	0.151	40.51%Harpadon microchir	41.68%	52.78%Saurida undosquamis	–	–
ND1	4	50.46%	3.18	0.063	47.79%Saurida undosquamis	49.59%	54.87%Trachinocephalus myops	–	–
ND2	4	50.47%	2.55	0.050	47.56%Harpadon microchir	50.31%	53.69%Trachinocephalus myops	–	–
COX1	4	48.34%	1.72	0.036	45.84%Harpadon microchir	48.90%	49.71%Saurida elongata	–	–
COX2	4	46.71%	2.06	0.044	43.85%Harpadon microchir	47.25%	48.48%Trachinocephalus myops	–	–
ATP8	4	46.43%	4.40	0.095	42.26%Harpadon microchir	45.83%	51.79%Saurida elongata	–	–
ATP6	4	46.89%	1.92	0.041	44.59%Harpadon microchir	46.86%	49.27%Trachinocephalus myops	–	–
COX3	4	48.81%	1.28	0.026	47.58%Harpadon microchir	48.76%	50.13%Trachinocephalus myops	–	–
ND3	4	50.14%	1.34	0.027	48.15%Harpadon microchir	50.71%	51.00%Trachinocephalus myops	–	–
ND4L	4	54.12%	0.89	0.016	53.20%Harpadon microchir	54.21%	54.88%Trachinocephalus myops	–	–
ND4	4	49.82%	1.97	0.039	47.28%Harpadon microchir	49.96%	52.06%Trachinocephalus myops	–	–
ND5	4	48.42%	1.83	0.038	46.71%Harpadon microchir	47.99%	50.98%Trachinocephalus myops	–	–
ND6	4	52.35%	4.77	0.091	48.66%Saurida undosquamis	50.77%	59.20%Trachinocephalus myops	–	–
CYTB	4	48.84%	3.02	0.062	44.61%Harpadon microchir	49.78%	51.18%Saurida elongata	–	–

Families of Aulopiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Aulopiformes

Synodontidae	4	48.87%	2.01	0.041	46.54%Harpadon microchir	48.78%	51.41%Trachinocephalus myops	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Aulopiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Aulopiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.